View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676-Insertion-10 (Length: 419)
Name: NF5676-Insertion-10
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 401
Target Start/End: Complemental strand, 10794817 - 10794422
Alignment:
| Q |
6 |
caggtagttatgacatcttcagcagctttgcggataaacaatcttcgacgacactttgattcggatagcacagtcaacaaggtacgaaatatgaatttct |
105 |
Q |
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| T |
10794817 |
caggtagttatgacatcttcagcagctttgcggataaacaatattcgacgacactttgattcggataacacagtcaacaaggtacgaaatatgaatttct |
10794718 |
T |
|
| Q |
106 |
cacataacaatcattaacatttgttgcaaatctgtttgtgtacttataagttacggtgttccctttcgaaagttctcacattcatctgtgtctcactata |
205 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
10794717 |
cacataacaatcattaacatttgttgcaaatctttttgtttacttataagttacggtgttccctttcgaaagttctcacattcatttgtgtctaactata |
10794618 |
T |
|
| Q |
206 |
gtgaaagtttgatacatactttataaacagaatgtaacatgggtttgatatgcagcctaccgaagttaatgctgttggagcttcgtcaatcaatgtgaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10794617 |
gtgaaagtttgatacatactttataaacagaatgtaacatgggtttgatatgcagcctaccgaagttaatgctgctggagcttcgtcaatcaatgtgaag |
10794518 |
T |
|
| Q |
306 |
gtagcttcagaggtttctgaagcgttatcactaggacgtgcagttgttgctctggaatctaccatcatttcacatggtattatatatcttttcgta |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794517 |
gtagcttcagaggtttctgaagcgttatcactaggacgtgcagttgttgctctggaatctaccatcatttcacatggtattatatatcttttcgta |
10794422 |
T |
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