View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676-Insertion-12 (Length: 391)
Name: NF5676-Insertion-12
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 23129787 - 23130064
Alignment:
| Q |
7 |
attaccgctgaaaagtgggt-gataatttggtttgtgttggaataatcccatttggttataagtgattctgcagttaagatattttcttccattaaggag |
105 |
Q |
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| T |
23129787 |
attaccgctgaaaagtgggttgataatttggtttgtgttggaataatcccatttggttataagtgattctgcagttaagatattttcttccattaaggag |
23129886 |
T |
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| Q |
106 |
tctgagaaagtgaaagtgtggtgaggtgatggtaatgttgatgatcttgatgatgaaggaggtgttggatggaagaaaatgcttctcattccttttctag |
205 |
Q |
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| T |
23129887 |
tctgagaaagtgaaagtgtggtgaggtgaggaaggtgatggtaatgttgatgatgaaggaggtgttggatggaagaaaatgcttctcattccttttctag |
23129986 |
T |
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| Q |
206 |
gcattttgaaaattcaaagaaaacttgttatgtttctgtttgatttggtgttttatgaggttgagaattgaactaatg |
283 |
Q |
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| T |
23129987 |
gcattttgaaaattcaaagaaaacttgttatgtttctgtttgatttggtgttttttgaggttgagaattgaactaatg |
23130064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 23130101 - 23130173
Alignment:
| Q |
320 |
atatagagaaaattaagtgtaatt-atggttgactttttcattggatgagtaatagtggcgtgtcatagttgg |
391 |
Q |
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| T |
23130101 |
atatagagaaaattaagtgtaatttatggttgactttttcattggatgagtaatagtggcgtgtcatagttgg |
23130173 |
T |
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