View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676-Insertion-3 (Length: 708)

Name: NF5676-Insertion-3
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676-Insertion-3
NF5676-Insertion-3
[»] chr8 (1 HSPs)
chr8 (6-686)||(43805148-43805825)


Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 6 - 686
Target Start/End: Complemental strand, 43805825 - 43805148
Alignment:
Q  6 cacttaaatgctgcaaagagcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataagaaagataatgggt 105  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43805825 cacttaaaagctgcaaagtgcaaaccttcctcatattacgccaataggcaccgtattcagcaaaaaccaaccctttagaaccataagaaagataatgggt 43805726  T
Q  106 ggcttcaagttttggacgggaagagaaaacaacgtcgtgtgttttgaggaattgttctgctgctgaagaggaagagacaatgattgttgggacctgtcct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  43805725 ggcttcaagttttggacgggaagagaaaacaacgtcgtgtgttttgaggaattgttctgctgctgaagaggaagaaacaatgattgttgggacttgtcct 43805626  T
Q  206 aaacgtagtaacatgataggaccgtgttttttggacaaggcttggagtgcacggtgtgggagagtacccagcatgtggaggttaccgatgactggatatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43805625 aaacgtagtaacatgataggaccgtgttttttggacaaggcttggagtgcacggtgtgggagagtacccagcaagtggaggttaccgatgactggatatc 43805526  T
Q  306 cccgtggacctggtggttgtctccggtcatattttggttgtttacgacggaggaacaaggtgatggcggagagaatgaagatgagtgtgaaaatgagaaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43805525 cccgtggacctggtggttgtctccggtcatattttggttgtttacgacggaggaacaaggtgatggcggagagaatgaagatgagtgtgaaaatgagaaa 43805426  T
Q  406 caggggaagggatgaaagaaacatgttttcgatgaaaatgaggctgcttctgatttttcataagcaaagtggtggtagataagatgaaaagaagttttga 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43805425 caggggaagggatgaaagaaacatgttttcgatgaaaatgaggctgcttctgatttttcataagcaaagtggtggtagataagatgaaaagaagttttga 43805326  T
Q  506 taacattttaataattggttgacaacttcaagcccccagttagtctttaccagaaccgttcaaaagcagccactgtttctccattttttgccattagtat 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43805325 taacattttaataattggttgacaacttcaagcccccagttagtctttaccagaaccgttcaaaagcagccactgtttctccattttttgccattagtat 43805226  T
Q  606 aatattaagggtccactcacagttgcattaaattaaagagctaaataaaaactaatgcatttactgggtgatagtcttctg 686  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  43805225 aatattaa-ggtccactcacagttgcattaaattaaagagctaaat-aaaactaatgcatttact-ggtgatactcttctg 43805148  T

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