View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676-Insertion-4 (Length: 650)
Name: NF5676-Insertion-4
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Complemental strand, 44598477 - 44597835
Alignment:
| Q |
8 |
gtttgtattttggtgggaggttgtttgtttctttgttgggtatttaggcatctgagggaattatttgccatcgatcctgcggattacatgcttgctattt |
107 |
Q |
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| T |
44598477 |
gtttgtattttggtgggtggttgtttgtttctttgttgggtatttaggcatctgagggaattatttgctatcgatcctgcggattacatgcttgctattt |
44598378 |
T |
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| Q |
108 |
gtggcaatgatacattgagggaaatgtcttctcctggaaaaagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaa |
207 |
Q |
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| T |
44598377 |
gtggcaatgatacattgagggaaatgtcttctcctggaaaaagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaa |
44598278 |
T |
|
| Q |
208 |
gtctgaagtcaaggttagtcctacttaattactagacttgaaaaagcattatgtttgatgagaaaagtataaaacctatattgagcaaggtgaaatttca |
307 |
Q |
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| T |
44598277 |
gtctgaagtcaaggttagtcctaattaattactagacttgaaaaagcattatgtttgatgagaaaagtataaaacctatattgagcaaggtgaaatttca |
44598178 |
T |
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| Q |
308 |
atcacagcttttggtcaccatgcttttttcctctgtttcaatgattagttggtggccatgtcaggtgctcatctggatgcttcccagttactatcaacat |
407 |
Q |
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| T |
44598177 |
atcacagcttttggtcaccatgcttttttcctctgtttcattgattagttggtggccatgtcaggtgctcatcaggatgcttcctagttactatcaacat |
44598078 |
T |
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| Q |
408 |
gtttctcagtacaagaactcgttggttacgaaattcctgggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaatttt |
507 |
Q |
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| T |
44598077 |
gtttctcagtacaagaactcgttggttacgaaattcctaggagttcattgtgtcaaacctattggaggacaaaaggtatggactacctaatttaaatttt |
44597978 |
T |
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| Q |
508 |
gcactgaactgatgtgctatatgaatgttagtaataatataaatgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatgtgt |
607 |
Q |
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| T |
44597977 |
gcactgaactgatgtactatatgaatgcttgtaataatataaacgaatacttgtattgctatggaaaaacagactcgatttattgtaatgggcaatgtgt |
44597878 |
T |
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| Q |
608 |
tttgttcggagtatcgaattcataagcgatttgacctcaaagg |
650 |
Q |
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| T |
44597877 |
tttgttcggagtatcgaattcataagcgatttgacctcaaagg |
44597835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 39806577 - 39806402
Alignment:
| Q |
48 |
tatttaggcatctgagggaattatttgccatcgatcctgcggattacatgcttgctatttgtggcaatgatacattgagggaaatgtcttctcctggaaa |
147 |
Q |
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| T |
39806577 |
tatttagacatctaagggaattatttgccatagatcctgcggattacatgcatgctatttgtggaaatgattcactcagagagatgtcttctcctggcaa |
39806478 |
T |
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| Q |
148 |
aagtggaagcttcttttaccttactcaagatgaccgatttgttatcaaaaccttgaagaagtctgaagtcaaggtt |
223 |
Q |
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| T |
39806477 |
aagtggaagcatcttttacctcactcaagacgaccgtttcataatcaaaacggtgaagaaatctgaagtcaaggtt |
39806402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 39806097 - 39806019
Alignment:
| Q |
572 |
aaaaacagactcgatttattgtaatgggcaatgtgttttgttcggagtatcgaattcataagcgatttgacctcaaagg |
650 |
Q |
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| T |
39806097 |
aaaaacagattcggtttattgtgatgggcaatgtgttttgttcggagtatcgaatccataaaaggtttgatctcaaagg |
39806019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 488
Target Start/End: Complemental strand, 39806314 - 39806192
Alignment:
| Q |
366 |
tgtcaggtgctcatctggatgcttcccagttactatcaacatgtttctcagtacaagaactcgttggttacgaaattcctgggagttcattgtgtcaaac |
465 |
Q |
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| T |
39806314 |
tgtcaggtgcttatcagaatgcttccacgttactaccaacatgtttgtcaatacaagaactctttggtaactgcattcttaggggcacattgtatcaaac |
39806215 |
T |
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| Q |
466 |
ctattggaggacaaaaggtatgg |
488 |
Q |
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| T |
39806214 |
ctgttggaggtcaaaaggtatgg |
39806192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 19641787 - 19641755
Alignment:
| Q |
134 |
tcttctcctggaaaaagtggaagcttcttttac |
166 |
Q |
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| T |
19641787 |
tcttcgcctggaaaaagtggaagcttcttttac |
19641755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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