View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676-Insertion-6 (Length: 455)
Name: NF5676-Insertion-6
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 22047685 - 22047491
Alignment:
| Q |
244 |
aacttactccatcaattaaagacatttcattaatagtatgtattcattatcatcctccacaatctctttataaaccttatcacctaactccctcttaagc |
343 |
Q |
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| T |
22047685 |
aacttactccatcaattaaagacatttcattaatagtatgtattcattatcatcctccacaatatctttataaaccttatcacctaacttcctcttaagc |
22047586 |
T |
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| Q |
344 |
tttacaaactaactatcaagaccctatacaca-tacttcaaaatgtcttcaacaatccaaccaacaatcaatgatacttttttgactgctcacat |
437 |
Q |
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| T |
22047585 |
tttccaaactaactatcaagaccctatacacattacttcaaaatgtcttcaacaatccaaccaacaatcaatgatacttttttgactgctcacat |
22047491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 22049460 - 22049331
Alignment:
| Q |
7 |
aactacaacatttatacatcctttactaaataaataattctacatataagattacactaaaaaggacgtatacttatcttacaaattatcatataattat |
106 |
Q |
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||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22049460 |
aactacaccatttatacatcctttgctaaataaataatcctacgtataagattacactaaaaaggacgtatagttatcttacaaattatcatataattat |
22049361 |
T |
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| Q |
107 |
cctcaataattttctcattaggtatgttct |
136 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22049360 |
cctcaataattttctcattaggtatgttct |
22049331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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