View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676-Insertion-8 (Length: 474)

Name: NF5676-Insertion-8
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676-Insertion-8
NF5676-Insertion-8
[»] chr3 (2 HSPs)
chr3 (21-416)||(44594548-44594938)
chr3 (357-444)||(46853502-46853590)
[»] chr7 (3 HSPs)
chr7 (348-474)||(27571861-27571988)
chr7 (351-474)||(41788315-41788439)
chr7 (362-474)||(23458058-23458169)
[»] chr6 (2 HSPs)
chr6 (358-442)||(25388108-25388192)
chr6 (366-453)||(1485123-1485211)
[»] chr5 (3 HSPs)
chr5 (357-415)||(35138991-35139050)
chr5 (382-446)||(28110431-28110496)
chr5 (348-404)||(35073397-35073453)
[»] chr1 (2 HSPs)
chr1 (357-412)||(48548982-48549038)
chr1 (357-415)||(1233363-1233422)
[»] chr2 (3 HSPs)
chr2 (350-391)||(16956752-16956793)
chr2 (348-444)||(44439283-44439380)
chr2 (357-444)||(4894125-4894213)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 416
Target Start/End: Original strand, 44594548 - 44594938
Alignment:
Q  21 tgggtgcagactcaaggttaatgaattcaagtctatggtaaattatttgagagagttcgagttcaaattctgattgaaataatatttaattttgagtgtt 120  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  44594548 tgggtgtagactcaaggttaatgaattcaagtccatggtaaattatttgagagagttcgagttcaaattccgattgaaataatatttaattctgagtgtt 44594647  T
Q  121 aactttcgtctcctttaatttttcgattataacaatctagtgtattttgcatatcaccatgagtttgtcgaaatcacgatgattttgtaaaactacatag 220  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  44594648 aactttcgtctcctttaatttttcgattataacaatctagtatattttgtatattatcatgagtttgtcgaaatcatgatgattttgtaaaactacatag 44594747  T
Q  221 taaaacttttataaaacaagtgatttacgacaaacttatgtgatattatgttataccgtatttggttttgtcttgacaaaaaattaattttaaatagatt 320  Q
    |  || ||||| |||||||||| ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  44594748 tgtaatttttacaaaacaagtggtttacgacaaacttatgtgatattatgtta-----tatttggttttgtcttgacaaaaaattaattttaaatagatt 44594842  T
Q  321 gattctataaattgatattagagtaacagtgaattaaaggtaaaatgatttatatttagatacatttatatcaaagtgagttaacaataaatttgc 416  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  44594843 gattctataaattgatattagaataatagtgaattaaaggtaaaataatttatatttagatgcatttatataaaagtgagttaacaataaatttgc 44594938  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 46853502 - 46853590
Alignment:
Q  357 aaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaag 444  Q
    |||||||| |||||||| |   |||| |||||| | |||||||||| ||||||||||||| |  ||| ||||||||||| |||||||||    
T  46853502 aaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaag 46853590  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 474
Target Start/End: Complemental strand, 27571988 - 27571861
Alignment:
Q  348 agtgaattaaaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaagtt 446  Q
    ||||| ||||||||||||||||||||  || ||||||||||| | || ||||||| || |||||| ||| |  ||| ||||||||||| ||||||||| |    
T  27571988 agtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagct 27571889  T
Q  447 tcaatttataactttaaataggatcaat 474  Q
     |||||| |||||| || ||| ||||||    
T  27571888 ccaatttctaacttcaagtagaatcaat 27571861  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 474
Target Start/End: Complemental strand, 41788439 - 41788315
Alignment:
Q  351 gaattaaaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaagtttca 449  Q
    ||||| |||||||| |||||||| |||  ||||||| |||| |||||||||| ||||  ||||||| |  ||| |||||||| || | ||||||||||||    
T  41788439 gaattgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttca 41788340  T
Q  450 atttataactttaaataggatcaat 474  Q
    |||| || |||||| ||| ||||||    
T  41788339 atttctagctttaagtagaatcaat 41788315  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 23458169 - 23458058
Alignment:
Q  362 aaaatgatttatatttagatacatttatatcaaagtgagttaacaataaatttgcgcattacaatcaattctaaaatcaaaagtttcaatttataacttt 461  Q
    |||||||||||| ||| ||||||||| | | ||||||||| ||||| ||||||| |  | | ||||||||||||| ||||||||  ||| || ||||| |    
T  23458169 aaaatgatttatgtttggatacatttctct-aaagtgagtaaacaacaaatttgagggtcaaaatcaattctaaattcaaaagtcccaacttctaactct 23458071  T
Q  462 aaataggatcaat 474  Q
    || ||| ||||||    
T  23458070 aactagaatcaat 23458058  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 442
Target Start/End: Complemental strand, 25388192 - 25388108
Alignment:
Q  358 aggtaaaatgatttatatttagatacatttatatcaaagtgagttaacaataaatttgcgcattacaatcaattctaaaatcaaa 442  Q
    |||||| |||||||| |||| |||| |||||| | |||||||||| |||||||||||| |  | | |||||||||||||||||||    
T  25388192 aggtaatatgatttacatttggatatatttatgtaaaagtgagttgacaataaatttgagtgtcaaaatcaattctaaaatcaaa 25388108  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 1485123 - 1485211
Alignment:
Q  366 tgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaagtttcaattt 453  Q
    |||||||  ||| |||||| |||| | |||||||||| ||||||||||||| |  ||| ||||||||||| ||||||||| | ||||||    
T  1485123 tgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaattt 1485211  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 35138991 - 35139050
Alignment:
Q  357 aaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttg 415  Q
    ||||||||||||||||| || ||||||||| |||| |||||||||| |||||||||||||    
T  35138991 aaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttg 35139050  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 28110431 - 28110496
Alignment:
Q  382 acatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaagtt 446  Q
    |||||||||| |||||||||| ||| ||||||||| |  | | |||||||||||||||||||||||    
T  28110431 acatttatataaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagtt 28110496  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 35073397 - 35073453
Alignment:
Q  348 agtgaattaaaggtaaaatgatttatatttagatacatttatatcaaagtgagttaa 404  Q
    |||||||| ||||| |||| |||||| |||  |||||||||||| ||||||||||||    
T  35073397 agtgaatttaaggtcaaataatttatgtttttatacatttatataaaagtgagttaa 35073453  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 48548982 - 48549038
Alignment:
Q  357 aaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaat 412  Q
    ||||||||||||||||| ||| ||||||||||| | |||||||||| ||||||||||    
T  48548982 aaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaat 48549038  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 1233422 - 1233363
Alignment:
Q  357 aaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttg 415  Q
    |||||||||| |||||| |||||||||||| || | |||||||||| |||||||||||||    
T  1233422 aaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttg 1233363  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 16956752 - 16956793
Alignment:
Q  350 tgaattaaaggtaaaatgatttatatttagatacatttatat 391  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  16956752 tgaattgaaggtaaaataatttatatttaaatacatttatat 16956793  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 444
Target Start/End: Complemental strand, 44439380 - 44439283
Alignment:
Q  348 agtgaattaaaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaag 444  Q
    ||||| ||||| ||||| |||||||| ||| ||||  ||||| | |||||||||| ||||||||||||| |  ||| |||||||| || |||||||||    
T  44439380 agtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaag 44439283  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 4894125 - 4894213
Alignment:
Q  357 aaggtaaaatgatttatatttagatacatttatatcaaagtgagtt-aacaataaatttgcgcattacaatcaattctaaaatcaaaag 444  Q
    |||||||| |||||||| |||||||||||| || | ||||||| || || |||||||||| | || | |||||||| || |||||||||    
T  4894125 aaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaag 4894213  T

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