View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676-Insertion-9 (Length: 463)
Name: NF5676-Insertion-9
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676-Insertion-9 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 179 - 463
Target Start/End: Complemental strand, 9588585 - 9588301
Alignment:
| Q |
179 |
gagtcatctcatcaactgtggcttgtggaaatttcctttatgagccatttccatgtccatatcaacttaatcaaaaggttaccattttataacaacaaca |
278 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9588585 |
gagtcatctcatcaactgtggtttgtggaaatttcctttatgagccatttccatgtccatatcaacttaatcaaaaggttaccattttataacaacaaaa |
9588486 |
T |
|
| Q |
279 |
aaaattgcaatgggggtagggcacattatcactagtactagattagcaaaattatgcaaaccctatattccatttcccnnnnnnnaggaaaaataaaata |
378 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9588485 |
aaaattgcaataggggtagggcacattatcactagtactagattaccaaaattatgcaaaccctatattccatttccctttttttaggaaaaataaaata |
9588386 |
T |
|
| Q |
379 |
attaattaccaagtagattgctgacaagttgtaaaggactaatattcctaaccaaatatacactataactagattataaaccaaa |
463 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9588385 |
attaattaccaagtagattggtgaaaagttgtaaaggactaatattcctaaccaaaaatacactacaactagattataaaccaaa |
9588301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 9588756 - 9588644
Alignment:
| Q |
8 |
acaattttggactcattgcactttgaagacatcttcattgttgtannnnnnngtaaatcagtttgcatgaaaaccgtttacttgtttacagggatttgtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9588756 |
acaattttggactcattgcactttgaagacatcttcattgttgtatttttttgtaaatcagtttgcatgaaaaccgtttacttgtttacagggatttgtt |
9588657 |
T |
|
| Q |
108 |
cttgcatgcattc |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9588656 |
cttgcatgcattc |
9588644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University