View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_16 (Length: 375)
Name: NF5676_high_16
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 1560342 - 1560650
Alignment:
| Q |
14 |
atatggcacaataaaaaataaatattgatatcacatagacttgttgagtatcaaagtatttcgctaagttctaaagctaggaaagattgaatgttttgaa |
113 |
Q |
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| T |
1560342 |
atatggcacaataaaaaaaaaatattgatatcacatagacttgttgagtatcaaagtatttcgctaagttgtatagctaggaaagattgaatgttttgaa |
1560441 |
T |
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| Q |
114 |
ggttaaatgatttggtttcagaaaatctgcaactataaaaagcgttttgaaattattagatttcatcacaataaaagacaaaccaaatctctattctttc |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1560442 |
ggtttaatgatttggtttcagaaaatctgcaactataaaaagcgttttgaaattattagatttcatcacaataaaagacaaaccaaatccctattctttc |
1560541 |
T |
|
| Q |
214 |
tattgctatagaaaatcaaagtttgaaggtggggtaaactcatgtgactaacgtccctctcaatgcatgttttccactacttttcaatcaagactttaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1560542 |
tattgctatagaaaatcaaagtttgaaggtggggtaaactcatgtgactaacgtccttctcaatgcatgttttccactacttttccatcaagactttaac |
1560641 |
T |
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| Q |
314 |
aaatacatg |
322 |
Q |
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| T |
1560642 |
aaatacatg |
1560650 |
T |
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