View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676_high_2 (Length: 659)
Name: NF5676_high_2
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 12 - 643
Target Start/End: Original strand, 29330080 - 29330713
Alignment:
| Q |
12 |
atcatcattggtctcctcgcctgttaagtcaagaagcggctgagcgcatgcaatcaacattggcataattttatctataaatttgtcaacactcactttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29330080 |
atcatcattggtctcctcgcctgttaagtcaagaagcggctgagcgcatgcaatcaacattggcataattttatctataaatttgtcaacactcactttt |
29330179 |
T |
|
| Q |
112 |
gggcattgacagatttgatccaaagcctgcacaatattcattcagtcagcaatgttaagtttcagctagcgtcataattgtaaatggcctatcattgatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29330180 |
gggcattgacagatttgatccaaagcctgcacaatattcattcagtcagcaatgttaagtttcagctagcgtcataatggtaaatggcctatcattgatt |
29330279 |
T |
|
| Q |
212 |
tcaaaatatacctttaaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccaccttcaaatgttaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29330280 |
tcaaaatatacctttaaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccaccttcaaatgttaca |
29330379 |
T |
|
| Q |
312 |
agataaattagcacaataagaaatcattgcataattatttggcagccattaagatatattatatatcacaaatttaaccaaattttgaaagatatatacc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29330380 |
agataaattagcacaataagaaatcattgcataattatttggcagccattaagatatattatatatcacaaatttaaccaaattttgaatgatatatacc |
29330479 |
T |
|
| Q |
412 |
aagataattaggtaaatcaagactaatctagaacattgcaaaagtatttgtacgacctataaaattgaatattttatattcctcttttaatttctacata |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29330480 |
aagataattaggtaaatcaagactaatctagaacattgcaaaagtatttgtacgacctataaaattgaatattttatattcctcttttaatttctacata |
29330579 |
T |
|
| Q |
512 |
tctctattttaaatatggtttcaattttaca--ctatataatttgagtcaattcaaaaaagaattagaagaaatactcgcctgaacagcttcctgctctt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29330580 |
tctctattttaaatatggtttcaattttacactctatataatttgagtcaattcaaaaaagaattagaagaaatactcacctgaacagcttcctgctctt |
29330679 |
T |
|
| Q |
610 |
tgaaatcatctggcccaactttcctaacaagata |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
29330680 |
tgaaatcatctggcccaactttcctaacaagata |
29330713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 66 - 644
Target Start/End: Original strand, 29319113 - 29319670
Alignment:
| Q |
66 |
caacattggcataattttatctataaatttgtcaacactcacttttgggcattgacagatttgatccaaagcctgcacaatattcattcagtcagcaatg |
165 |
Q |
| |
|
||||||||||||||||||| | ||||| |||| || ||||||| | |||||||||||||| ||||||| |||||||||||| || ||||| | || ||| |
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|
| T |
29319113 |
caacattggcataattttagcaataaagttgttaatactcactctagggcattgacagatgtgatccagagcctgcacaatgtttattcaattaggaata |
29319212 |
T |
|
| Q |
166 |
ttaagtttcagctagcgtcataattgtaaatggcctatcattgatttcaaaatatacctttaaaatgatacattttgttaagtattctgtattgctcaat |
265 |
Q |
| |
|
|| ||||| ||| | | || |||| | ||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
29319213 |
caaactttcaacta------tgagtg-aaattgactatcattgatttcaga-tatacctttaggatgatacattttgttaagtaatctgtattgctcaat |
29319304 |
T |
|
| Q |
266 |
tttccatcaagtgatattagagattccaccaccttcaaatgttacaagataaattagcacaataagaaatcattgcataattatttggcagccattaaga |
365 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||| ||||| ||| |||| |||||||||| ||||||| | | || |||||||||| | || |||||| |
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|
| T |
29319305 |
tttccttcaagcgatattagagattccatgaccttcgaatgtgacatgatacattagcacaaaaagaaattaattcacaattatttggaaacctttaaga |
29319404 |
T |
|
| Q |
366 |
tata-ttatatatcacaaatttaaccaaattttgaaagatatataccaagataattaggtaaatcaagactaatctagaa-cattgcaaaagtatttgta |
463 |
Q |
| |
|
||| || | ||||||||||| | |||||| ||| ||||||||||||||| || ||||| |||| || | ||| ||| | ||||| |||||||| |
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|
| T |
29319405 |
catacgaatttgtcacaaatttaccaaaatttggaatgatatataccaagatcataaggtacatcatgatcattcttgaatgaccacaaaattatttgta |
29319504 |
T |
|
| Q |
464 |
cgacctataaaattgaatattttatattcctcttttaatttctacatatctctattttaaatatggtttcaattttaca--ctatataatttgagtcaat |
561 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||||| |||||| ||||||| | ||||||||| |||| ||||||||||||||||| |
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|
| T |
29319505 |
tgaccaataaaat----aattaaatatt----------tttctacttatctcaattttaacttcggtttcaataatacatcatatataatttgagtcaac |
29319590 |
T |
|
| Q |
562 |
tcaaaaaagaattagaagaaatactcgcctgaacagcttcctgctctttgaaatcatctggcccaactttcctaacaagatat |
644 |
Q |
| |
|
|| |||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| |
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|
| T |
29319591 |
tc---aaagaattaggagaaatactaacctgaacagcttcctgctcttcgaaattatctggcccaatttccctaacaagatat |
29319670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 370
Target Start/End: Original strand, 29301458 - 29301802
Alignment:
| Q |
36 |
taagtcaagaagcggctgagcgcatgcaatcaacattggcataattttatctataaatttgtcaacactcacttttgggcattgacagatttgatccaaa |
135 |
Q |
| |
|
|||||||||| | || |||| | || ||| |||||| ||| || ||||| |||||||||||||| |||||| |||||||| ||||||||||||||| | |
|
|
| T |
29301458 |
taagtcaagatggggttgagtggatccaagcaacatcagcacaagtttatgtataaatttgtcaatactcacacttgggcatcgacagatttgatccaga |
29301557 |
T |
|
| Q |
136 |
gcctgcacaatattcattcagtcagcaatgttaag-tttcagctagcgtcataatt---------gtaaatggcctatcattgatttcaaaatatacctt |
225 |
Q |
| |
|
|||||| |||| || ||||| | || ||| ||| ||||| ||||| | || || ||||||| |||||||||||||||||| ||||||| |
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|
| T |
29301558 |
gcctgcgcaatgtttattcaattaggaataataaactttcacctagcattatcatgtgagtggaggtaaatgtcctatcattgatttcaaa-tatacctg |
29301656 |
T |
|
| Q |
226 |
taaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccaccttcaaatgttacaagataaattagca- |
324 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
29301657 |
tacgatgatacattttgctaagtattctgtattgctcaattttccatcaagtgatattagagattccatgaccttcaaatgttacaagatcaattagcat |
29301756 |
T |
|
| Q |
325 |
caataagaaatcattgcataattatttggcagccattaagatatat |
370 |
Q |
| |
|
|| ||||||||||| |||||||||||| | || ||||||||||| |
|
|
| T |
29301757 |
aaaaaagaaatcatttcataattatttgacgacctttaagatatat |
29301802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 543 - 644
Target Start/End: Original strand, 29301941 - 29302042
Alignment:
| Q |
543 |
ctatataatttgagtcaattcaaaaaagaattagaagaaatactcgcctgaacagcttcctgctctttgaaatcatctggcccaactttcctaacaagat |
642 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||||| || || |||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
29301941 |
ctatataatttgagtcaattcaaaacagaattagcagaagtactcaccagatcagcttcctgctctttaaaattatctggcccaactttcctaacaagat |
29302040 |
T |
|
| Q |
643 |
at |
644 |
Q |
| |
|
|| |
|
|
| T |
29302041 |
at |
29302042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 29292263 - 29292369
Alignment:
| Q |
204 |
cattgatttcaaaatatacctttaaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccaccttcaa |
303 |
Q |
| |
|
||||||||||||| ||||||||||| |||| | | |||| |||| |||||||||||||| ||||| |||| |||||| |||| ||||| | |||||| |
|
|
| T |
29292263 |
cattgatttcaaa-tatacctttaagatgacataacttgtcaagtggtctgtattgctcaagtttccttcaattgatatcagagcttccaaaatcttcaa |
29292361 |
T |
|
| Q |
304 |
atgttaca |
311 |
Q |
| |
|
| |||||| |
|
|
| T |
29292362 |
acgttaca |
29292369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 42284782 - 42284655
Alignment:
| Q |
12 |
atcatcattggtctcctcgcctgttaagtcaagaagcggctgagcgcatgcaatcaacattggcataattttatctataaatttgtcaacactcactttt |
111 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42284782 |
atcatccttggactcctcgcccgttaagttaagaaggggctgagcacatgcaatcaacattggcataattttatctataaatttgtcaacactcactttt |
42284683 |
T |
|
| Q |
112 |
gggcattgacagatttgatccaaagcct |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42284682 |
gggcattgacagatttgatccaaagcct |
42284655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 42284657 - 42284580
Alignment:
| Q |
222 |
cctttaaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccacct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42284657 |
cctttaaaatgatacattttgttaagtattctgtattgctcaattttccatcaagtgatattagagattccaccacct |
42284580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 42284582 - 42284528
Alignment:
| Q |
589 |
cctgaacagcttcctgctctttgaaatcatctggcccaactttcctaacaagata |
643 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42284582 |
cctgaacagcttcccgctctttgaaatcatctggcccaactttcctaacaagata |
42284528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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