View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_20 (Length: 354)
Name: NF5676_high_20
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 3800353 - 3800696
Alignment:
| Q |
1 |
gagatgcaaactttaaataattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagtttctaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3800353 |
gagatgcaaactttaaataattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaa |
3800452 |
T |
|
| Q |
101 |
ttggtccattgatggaaagtaacaacaacaaaagttcattatggcaagaagacacaacttgcttagattggttagataaacaagcacctcaatctgtcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800453 |
ttggtccattgatggaaagtaacaacaacaaaagttcattatggcaagaagactcaacttgcttagattggttagataaacaagcacctcaatctgtcat |
3800552 |
T |
|
| Q |
201 |
atatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttgtctttgggttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3800553 |
atatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgtt |
3800652 |
T |
|
| Q |
301 |
cgtcctagtaatgacaacaaggtaaactatgcagaccctgatga |
344 |
Q |
| |
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||||||||||||||||| |||||||||||| || ||||| |||| |
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| T |
3800653 |
cgtcctagtaatgacaataaggtaaactatacataccctaatga |
3800696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 3789736 - 3789411
Alignment:
| Q |
19 |
aattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagtttctaccaattggtccattgatggaaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3789736 |
aattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaa |
3789637 |
T |
|
| Q |
119 |
gtaacaacaacaaaagttcattatggcaagaagacacaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtag |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3789636 |
gtaacaacaacaaaagttcattatggcaagaagactcaacttgcttagaatggttagataaacaagcacctcaatcagtcatatatgtttcctttggtag |
3789537 |
T |
|
| Q |
219 |
cttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttgtctttgggttgttcgtcctagtaatgacaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3789536 |
cttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaat |
3789437 |
T |
|
| Q |
319 |
aaggtaaactatgcagaccctgatga |
344 |
Q |
| |
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|||||||||||| || ||||| |||| |
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| T |
3789436 |
aaggtaaactatacataccctaatga |
3789411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 344
Target Start/End: Complemental strand, 3768388 - 3768075
Alignment:
| Q |
31 |
tggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagtttctaccaattggtccattgatggaaagtaacaacaaca |
130 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||| || ||| ||||| ||||||||||| ||||||||||| ||||||||||||| | | | ||||| |
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|
| T |
3768388 |
tggtggctttgcaacacaacttatgatttagagcatgcaacattctccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaaca |
3768289 |
T |
|
| Q |
131 |
aaagttcattatggcaagaagacacaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaat |
230 |
Q |
| |
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|||||||||| ||||||||||||| |||| |||||||||| ||||||| ||| || | ||||| ||| ||||||||||||| ||||| |||| |||||| |
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| T |
3768288 |
aaagttcattctggcaagaagacatgacttccttagattggctagataagcaaccatcacaatcggtcgtatatgtttccttcggtagtttggcagtaat |
3768189 |
T |
|
| Q |
231 |
ggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttgtctttgggttgttcgtcctagtaatgacaacaaggtaaactat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3768188 |
ggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactat |
3768089 |
T |
|
| Q |
331 |
gcagaccctgatga |
344 |
Q |
| |
|
||| |||||||||| |
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| T |
3768088 |
gcataccctgatga |
3768075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 3780675 - 3780353
Alignment:
| Q |
22 |
tttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagtttctaccaattggtccattgatggaaagta |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
3780675 |
tttggagattggtggctttgcaacacaacttataatctcgagcatgcaacattttccatatcaccaaagtttctaccaattggtccattcatgtcaatcg |
3780576 |
T |
|
| Q |
122 |
acaacaacaaaagttcattatggcaagaagacacaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagctt |
221 |
Q |
| |
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| |||||| ||||||||| |||||||||||| |||| || ||||||||| | ||| || | |||||||||| ||| |||||||||||||||||| || |
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| T |
3780575 |
aagacaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagttt |
3780476 |
T |
|
| Q |
222 |
ggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttgtctttgggttgttcgtcctagtaatgacaacaag |
321 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |||| | |||||||||||||||| || ||||| || ||| |
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| T |
3780475 |
ggccgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttgttcgtccgagcaatgataataag |
3780376 |
T |
|
| Q |
322 |
gtaaactatgcagaccctgatga |
344 |
Q |
| |
|
|||||||||||| |||||||||| |
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| T |
3780375 |
gtaaactatgcataccctgatga |
3780353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 3755755 - 3755472
Alignment:
| Q |
19 |
aattttggagaatggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagtttctaccaattggtccattgatggaaa |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| | ||||||||| ||| | | ||||| |||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
3755755 |
aatttgggagaatggtggctttgtaacactagtatggatcttgaggctgaagcaatttccttatcaccaaaatttctaccaattggtccattaatggaaa |
3755656 |
T |
|
| Q |
119 |
gt---aacaacaacaaaagttcattatggcaagaagacacaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttgg |
215 |
Q |
| |
|
| | ||||||| | || || ||||||||||| ||| ||| |||| ||||||||| || | ||||| ||||||||||||||||||| ||||| |
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|
| T |
3755655 |
atgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatggttagatcaatatccacctaaatctgtcatatatgtttcatttgg |
3755556 |
T |
|
| Q |
216 |
tagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttgtctttgggttgt |
299 |
Q |
| |
|
||| || || ||| | | ||| ||||| || ||| |||| ||||| |||||||||||||| | ||||| |||||||||||| |
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| T |
3755555 |
tagtttaatatcaattggtccaaatcaattcaaagaattagctctagggcttgatcttcttgaaaggccttttctttgggttgt |
3755472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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