View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_29 (Length: 294)
Name: NF5676_high_29
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 42730633 - 42730356
Alignment:
| Q |
1 |
caatttacagcttcaacaacagaatcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730633 |
caatttacagcttcaacaacagattcagctcctacttttcccatcaaatcatcacaaccattttttctgttatcatttccacacaagaaaccagaaccaa |
42730534 |
T |
|
| Q |
101 |
caccaccaaacataggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttatacc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730533 |
caccaccaaacaaaggtgatacacggttccaagtactagaagaattagaaaactgatcagttccaccaccaattccacctttctttgctctccttatacc |
42730434 |
T |
|
| Q |
201 |
aacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42730433 |
aacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaatt |
42730356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28347024 - 28346947
Alignment:
| Q |
199 |
ccaacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaa |
276 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |
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| T |
28347024 |
ccaacacaaagatcaccattttccgctctcaaaaacacaattgaatccccagcaagaagcttcttctgattaacaaaa |
28346947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 40352478 - 40352558
Alignment:
| Q |
196 |
ataccaacacaaagatctccattttctgctctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaa |
276 |
Q |
| |
|
||||||||| |||| |||||| |||| ||||||| ||||||||| |||||||| ||||||||||| || || ||||||||| |
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| T |
40352478 |
ataccaacaaaaagttctccactttcagctctcagaaacacaatagaatcacctgcaacaagctttttctggttcacaaaa |
40352558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 21715911 - 21715861
Alignment:
| Q |
226 |
ctcaaaaacacaattgaatcaccagcaacaagcttcttatgattcacaaaa |
276 |
Q |
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||||||||||| | ||||||||||||||||||||||| || ||||||||| |
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| T |
21715911 |
ctcaaaaacaccacagaatcaccagcaacaagcttcttctggttcacaaaa |
21715861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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