View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_3 (Length: 624)
Name: NF5676_high_3
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 212 - 577
Target Start/End: Complemental strand, 50276681 - 50276314
Alignment:
| Q |
212 |
agcatttgtgacaaa--caattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcagcaattggagaacagtc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50276681 |
agcatttgtgacaaaaacaattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcaacaattggagaacagtc |
50276582 |
T |
|
| Q |
310 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276581 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
50276482 |
T |
|
| Q |
410 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
50276481 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaa |
50276382 |
T |
|
| Q |
510 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50276381 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccttcatagtggtagaaa |
50276314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 212 - 577
Target Start/End: Complemental strand, 50280705 - 50280338
Alignment:
| Q |
212 |
agcatttgtgacaaa--caattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcagcaattggagaacagtc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
50280705 |
agcatttgtgacaaaaacaattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcaacaattggagaacagtc |
50280606 |
T |
|
| Q |
310 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50280605 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
50280506 |
T |
|
| Q |
410 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
50280505 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaa |
50280406 |
T |
|
| Q |
510 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50280405 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccttcatagtggtagaaa |
50280338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 212 - 577
Target Start/End: Complemental strand, 50288349 - 50287982
Alignment:
| Q |
212 |
agcatttgtgacaaa--caattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcagcaattggagaacagtc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
50288349 |
agcatttgtgacaaaaacaattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcaacaattggagaacagtc |
50288250 |
T |
|
| Q |
310 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50288249 |
gacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaat |
50288150 |
T |
|
| Q |
410 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
50288149 |
ataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaa |
50288050 |
T |
|
| Q |
510 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
50288049 |
ttgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcattttcttcatagtggtagaaa |
50287982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50276860 - 50276672
Alignment:
| Q |
1 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50276860 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
50276761 |
T |
|
| Q |
101 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50276760 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
50276672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50280884 - 50280696
Alignment:
| Q |
1 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50280884 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
50280785 |
T |
|
| Q |
101 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50280784 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
50280696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 50288528 - 50288340
Alignment:
| Q |
1 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50288528 |
caaattttgttttcttcctgttctggtatatctttaatctgtcaaagggactggataatgttgatgttttaaatggatacataactctgatttttgaact |
50288429 |
T |
|
| Q |
101 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50288428 |
gttttatgtcactacgctgtaactcacaaatactgataaaacattttaattggacatttctctaaaagaaagacatctcagcatttgtg |
50288340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 616
Target Start/End: Complemental strand, 50276281 - 50276237
Alignment:
| Q |
572 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50276281 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50276237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 616
Target Start/End: Complemental strand, 50280305 - 50280261
Alignment:
| Q |
572 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50280305 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50280261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 616
Target Start/End: Complemental strand, 50287949 - 50287905
Alignment:
| Q |
572 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50287949 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50287905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 207 - 577
Target Start/End: Original strand, 14461795 - 14462166
Alignment:
| Q |
207 |
gatatagcatttgtgacaaa--caattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcagcaattggagaa |
304 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14461795 |
gatatagcatttgtgacaaaaacaattcgtgcgatatagcattactggactaaattatatgttttggttttgaataggcttatgtgcaacaattggagaa |
14461894 |
T |
|
| Q |
305 |
cagtcgacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14461895 |
cagtcgacttaggcttgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttgataaaattggtttgt |
14461994 |
T |
|
| Q |
405 |
tcaatataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtca |
504 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14461995 |
taaatataattttattgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaattggagttacagcggatcatggtca |
14462094 |
T |
|
| Q |
505 |
ttcaattgttggaaacagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
577 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
14462095 |
ttcaattgttggaaac-gtaatgcaggtgaggtgatgcaaccttgagattcattttcttcatagtggtagaaa |
14462166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 616
Target Start/End: Original strand, 14462199 - 14462243
Alignment:
| Q |
572 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14462199 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
14462243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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