View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_31 (Length: 287)
Name: NF5676_high_31
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 5674889 - 5675158
Alignment:
| Q |
1 |
accaccgccctttacaatatggttcccactttaacatcgtgatgacataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagt |
100 |
Q |
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| T |
5674889 |
accaccaccctttacaatatggttcccactttaacatcgtgatgacataatttacacagaatcacacaaatgaagcaaaaacaaaactagaaaacatagt |
5674988 |
T |
|
| Q |
101 |
actcctgtatttattttcatgacctcaggaaatagagtgtcgtcgattcttgtttggttttgttttacctttagcagatacaataccctccaaacgtgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
5674989 |
actcctgtatttattttcatgacctcaggaaatagagtgtcgtcgattcttgtttggttttattttacctttagcagatacaataccatccaaacgtgga |
5675088 |
T |
|
| Q |
201 |
aaaggagaaagcttcccaagtttctttgaaaccgaacttataaacgatttacgaggtagtggaggcttat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675089 |
aaaggagaaagcttcccaagtttctttgaaaccgaacttataaacgatttacgaggtagtggaggcttat |
5675158 |
T |
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