View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_37 (Length: 251)
Name: NF5676_high_37
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 2560243 - 2560324
Alignment:
| Q |
161 |
ttttctgcataaactttgttcaatttaagtagagtccatataaagcaaaaatattgagacaattaagaaccttgttctctgc |
242 |
Q |
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| T |
2560243 |
ttttctgcataaactttgttcaatttaagtagagtccatataaagcaaaaatattgagacaattaagaaccttgttctctgc |
2560324 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2560083 - 2560177
Alignment:
| Q |
1 |
ttaaggactagcttcctttacctccagtttaggactcaaaaatgagnnnnnnnnatttacttaaaaatggttccaatcaaaaaaggttgattctt |
95 |
Q |
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| T |
2560083 |
ttaaggactagcttccattacctccagtttgggactcaaaaatgagttttttttatttacttaaaaatggttccaatcaaaaaaggttgattctt |
2560177 |
T |
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