View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676_high_5 (Length: 530)
Name: NF5676_high_5
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 38174591 - 38175089
Alignment:
| Q |
14 |
cagagaggaaaggtagaaatactcatctcaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38174591 |
cagagaggaaaggtagaaatactcatcttaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcat |
38174690 |
T |
|
| Q |
114 |
ttaatcaacctgatgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaacatggaaacttgttattgattcgatgatgaacaaattag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38174691 |
ttaatcaacctgatgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaatatggaaactttttattgattcgatgatgaacaaattag |
38174790 |
T |
|
| Q |
214 |
ctaatcggaaaggtaaacatttgtactccttcatgtcacatcaaacacaattttatagcttcattaaataattaatgcatataatcatatttatagttca |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38174791 |
ctaataggaaaggtaaacatttgtactccttcatgtcacatcaaacacaattttgtagcttcattaaataattaatgtatataatcatatttatagttcg |
38174890 |
T |
|
| Q |
314 |
attacattacttattcaataaacttaaaaactactttnnnnnnnnnnnnnnnnnnnnataaatgtaatcaaatgaagtatatat---tggtggagtattg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| || ||||| ||||||| ||||||||||||| |
|
|
| T |
38174891 |
attacattacttattcaataaacttaaaaactatatt-----tttttttttttacttataaatgtaaccagatgaaatatatattggtggtggagtattg |
38174985 |
T |
|
| Q |
411 |
atgaattaagttcaatcaattctctcactatatattttcttt----gttttcttttcattctatacatagcccctaaaaggttataagtaagatgatatc |
506 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
38174986 |
atgaattaaattcaatcaattctctcactatatttttttttttttgtttttcttttcattctatacaaagcccctaaaaggttataactaagatgatatc |
38175085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 31836450 - 31836520
Alignment:
| Q |
273 |
ttcattaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaacttaaaaa |
343 |
Q |
| |
|
|||||| ||||||||||| || || |||||||||||| ||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
31836450 |
ttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatgaacctaaaaa |
31836520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 38133432 - 38133491
Alignment:
| Q |
276 |
attaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaa |
335 |
Q |
| |
|
||||||||||||||| || | ||||||||||||| |||| || |||| |||||||||||| |
|
|
| T |
38133432 |
attaaataattaatgtatctgatcatatttataggtcaaatatattaattattcaataaa |
38133491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University