View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_57 (Length: 211)
Name: NF5676_high_57
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 30091724 - 30091547
Alignment:
| Q |
16 |
aatatccaaaaatcagtctgatttctaattttgtgagttataaattccattacctcattctccaatactaatattagggaacctgatttagaactacctt |
115 |
Q |
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| T |
30091724 |
aatatccaaaaatcagtctgatttctaattttgtgagttataaattccattacctcattctccaatactaatattagggaacctgatttagaactacctt |
30091625 |
T |
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| Q |
116 |
ctgttttcgtaggcatatttttctccattctgaatcatcattagttctacttctaatgtgtagtatggttgcaggtat |
193 |
Q |
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| T |
30091624 |
ctgttttcataggcatatttttctccattctgaatcatcattagttctacttctaatgtgtagtatggttgcaggtat |
30091547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 30096838 - 30096670
Alignment:
| Q |
23 |
aaaaatcagtctgatttctaattttgtgagttataaattccattacctcattctccaatactaatattagggaacctgatttagaact-accttctgttt |
121 |
Q |
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| T |
30096838 |
aaaaatcagtctcatttctgattttgtgagttataaattccattacctcactatccaata------ttagggaacctgatttagaatttaccctctgttt |
30096745 |
T |
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| Q |
122 |
tcgtaggcatatttttctccattctgaatcatcattagttctac---ttctaatgtgtagtatggttgcaggtat |
193 |
Q |
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| T |
30096744 |
tcatagccatatttttctccattcggaatcatcattagttctacttcttctaatgtgtagtatggttgcaggtat |
30096670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 19394579 - 19394658
Alignment:
| Q |
114 |
ttctgttttcgtaggcatatttttctccattctgaatcatcattagttctacttctaatgtgtagtatggttgcaggtat |
193 |
Q |
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| T |
19394579 |
ttctgtttttgtaggcatgtttttcttcattctgaatcatcgttagttccatttctcatgtttagtgtggttgcaggtat |
19394658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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