View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_high_7 (Length: 496)
Name: NF5676_high_7
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Complemental strand, 36621749 - 36621290
Alignment:
| Q |
13 |
aatatagtacatgtagttgcatgattttgttttgatggactagtagttgaatgatatttttctaattaagacattataaggtaattaatcaacaaatagt |
112 |
Q |
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| T |
36621749 |
aatatagcacatgtagttgcatgattttgttttgatggactagtagttgaatgatatttttctaattaagacattataaggtaattaatcaacaaatagt |
36621650 |
T |
|
| Q |
113 |
gaaacatattttcattctgctatgagagacacaaacaaaccaaaacaattatcaagtcattgacaaatatttataaaaattatcgccaacatatttcctt |
212 |
Q |
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| T |
36621649 |
gaaacatattttcattctgctatgagagacacaaacaaaccaaaacaattatcaagtcattgacaaatatttataaaaattatcgccaacatatttcctt |
36621550 |
T |
|
| Q |
213 |
aagtgcagnnnnnnnn-agtgaaagataattacccatcaaattgttggaaattgtttaatgtattcattcattagaagttcataaattagaccctctaat |
311 |
Q |
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| T |
36621549 |
aagtgcagtttttttttagtgaaagataattacccatcaaattgttggaaattgtttaatgtattcatttattagaagttcataaactagaccctctaat |
36621450 |
T |
|
| Q |
312 |
ctgggtttcactcctccacctgagcttgtaataagagaaaccaatatagaaatataaaagaagacgaggtatagtctttgttcatacagttcggtcaatg |
411 |
Q |
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| T |
36621449 |
ctgggtttcactcctccacctgagcttgtaataagagaaaccaatataaaaatataaaagaagatgaggtatagtctttgttcatacagttcggtcaatg |
36621350 |
T |
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| Q |
412 |
atctctgcaactatagttcaatttctttccgtgatgaattacagtttacaatgttacaac |
471 |
Q |
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| T |
36621349 |
atctctgcaactatagttcaatttctttccgtgatgaattacagtttacaatgttacaac |
36621290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 474
Target Start/End: Complemental strand, 40324660 - 40324628
Alignment:
| Q |
442 |
gtgatgaattacagtttacaatgttacaaccaa |
474 |
Q |
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| T |
40324660 |
gtgatgaattaaagtttacaatgttacaaccaa |
40324628 |
T |
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