View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_1 (Length: 698)

Name: NF5676_low_1
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_1
NF5676_low_1
[»] chr1 (4 HSPs)
chr1 (80-682)||(16327753-16328357)
chr1 (1-79)||(6472739-6472818)
chr1 (81-132)||(20911554-20911605)
chr1 (43-81)||(20121053-20121091)
[»] scaffold0001 (1 HSPs)
scaffold0001 (81-337)||(51855-52111)
[»] chr3 (4 HSPs)
chr3 (88-337)||(14009553-14009806)
chr3 (84-229)||(12396037-12396182)
chr3 (1-79)||(16346045-16346123)
chr3 (41-79)||(2310028-2310066)
[»] chr2 (3 HSPs)
chr2 (1-80)||(15408637-15408716)
chr2 (569-618)||(24240876-24240925)
chr2 (41-80)||(6050978-6051017)
[»] scaffold1354 (1 HSPs)
scaffold1354 (81-229)||(1292-1440)
[»] scaffold0507 (1 HSPs)
scaffold0507 (1-81)||(10483-10562)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-79)||(483-561)
[»] chr6 (5 HSPs)
chr6 (1-79)||(20418333-20418410)
chr6 (149-229)||(21627090-21627170)
chr6 (41-80)||(30519039-30519078)
chr6 (41-79)||(20415800-20415838)
chr6 (41-79)||(20420365-20420403)
[»] scaffold0011 (1 HSPs)
scaffold0011 (80-263)||(61086-61269)
[»] scaffold0076 (1 HSPs)
scaffold0076 (40-79)||(54536-54575)
[»] chr8 (10 HSPs)
chr8 (152-229)||(18682292-18682369)
chr8 (152-229)||(18719568-18719645)
chr8 (152-229)||(18727854-18727931)
chr8 (163-298)||(18784807-18784942)
chr8 (438-480)||(23351153-23351195)
chr8 (158-238)||(16190274-16190354)
chr8 (37-79)||(26048020-26048062)
chr8 (37-79)||(35689993-35690035)
chr8 (37-81)||(21361474-21361518)
chr8 (37-81)||(26047295-26047339)
[»] chr7 (5 HSPs)
chr7 (152-229)||(13650740-13650817)
chr7 (596-639)||(5779332-5779375)
chr7 (158-229)||(22576107-22576178)
chr7 (41-79)||(8105663-8105701)
chr7 (37-81)||(5994799-5994843)
[»] scaffold0585 (1 HSPs)
scaffold0585 (47-79)||(3967-3999)
[»] scaffold0010 (1 HSPs)
scaffold0010 (41-81)||(136049-136089)
[»] chr4 (8 HSPs)
chr4 (41-77)||(2500279-2500315)
chr4 (37-80)||(10664875-10664918)
chr4 (37-80)||(10714271-10714314)
chr4 (37-80)||(10879020-10879063)
chr4 (37-80)||(10928041-10928084)
chr4 (41-79)||(1393353-1393391)
chr4 (43-79)||(14874093-14874129)
chr4 (37-81)||(17780092-17780136)
[»] scaffold0203 (1 HSPs)
scaffold0203 (43-79)||(2339-2375)
[»] scaffold0146 (1 HSPs)
scaffold0146 (41-81)||(5882-5922)


Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 80 - 682
Target Start/End: Original strand, 16327753 - 16328357
Alignment:
Q  80 cagtgatccatctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgat 179  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  16327753 cagtgatccatttgttcttgaagaactggcaaatcactataaaggtgaattacctggttttaagccaagctcaaaaatagcctctaaagtagctcctgat 16327852  T
Q  180 agagttgttttagaaagcccacaataacaacaaccaaactcacaaatggctacaaatacatgtattgatttggtcattcatcctgattacaaaccatatc 279  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16327853 agagttgtttcagaaagcccacaataacaacaaccaaactcacaaatggctacaaatacatgtattgatttggtcattcatcctgattacaaaccatatc 16327952  T
Q  280 atcttagtgctactc---attctaatatttcctttaacattgcactaagaagcatagccaaaaaacggtcatcctttcatgaacaatctatttctaatag 376  Q
    |||||||||||||||   ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  16327953 atcttagtgctactcattattctaatatttcctttgacattgcactaagaaacatagccaacaaacggtcatcctttcatgaaaaatctatttctgatag 16328052  T
Q  377 caaccattcctcatcagaagctacatttgaccctcaacattctcatgaacactctattgaacctagctcctcaattcaaatcattcctcaaccacaaatc 476  Q
    |||||||||||||| |  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  16328053 caaccattcctcattaagagctacatttgaccctcaaccttctcatgaacactctactgaacctagctcctcaattcatatcattcctcaaccacaaatc 16328152  T
Q  477 ataactatacatgtct-tcccccacccagcaataagtccatggttttgcctaggtatatcaatgaacgtggcctagcttatcatggccaggtcacaaaga 575  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  16328153 ataactatatatgtctcacccccacccaccaataagtccatggttttgcccagggatatcaatgaacgtggcctagcttatcatgggcaggtcacaaaga 16328252  T
Q  576 aactcaaagtttcaacaaaaatggaggtacaaagttattatttataataatcattgcaattacattgcatatctgtgtgtgtgtaataaacaataagagg 675  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||    
T  16328253 aactcaaagtttcaacaaaaatggaggtataaagttattatttataataatcattgcaattacattgcata--tgtgtgtgtgtaaaaaacaataggagg 16328350  T
Q  676 taagttg 682  Q
    |||||||    
T  16328351 taagttg 16328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6472818 - 6472739
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnn-ataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    |||| ||||||||||||||||||||||||        |||| |||||||||||||| |||||||||||||||||||||||    
T  6472818 aaataaataaaatattcatttttcatgcattttttttatagatttccttccacatgtttaatgaacttttgatctcatca 6472739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 20911605 - 20911554
Alignment:
Q  81 agtgatccatctgttcttgaagaactggcaaatcactataaaggtgaattac 132  Q
    |||||||| ||||||||| | ||||| |||||||||||| ||||||||||||    
T  20911605 agtgatccctctgttcttcaggaactagcaaatcactatcaaggtgaattac 20911554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 20121091 - 20121053
Alignment:
Q  43 ttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  20121091 ttccttccacatgcttaatgagcttatgatctcatcaca 20121053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 81 - 337
Target Start/End: Original strand, 51855 - 52111
Alignment:
Q  81 agtgatccatctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgata 180  Q
    |||||| ||||| ||||||| |||||| ||||||||||||||||| | ||||||  |||||| |||| |||||| | |||||||||| |||||||| |||    
T  51855 agtgattcatctattcttgatgaactgtcaaatcactataaaggtcagttaccttgttttaagccaaactcagagaaagcctctaaaatagctccttata 51954  T
Q  181 gagttgttttagaaagcccacaataacaacaaccaaactcacaaatggctacaaatacatgtattgatttggtcattcatcctgattacaaaccatatca 280  Q
    ||||||||| |||||||||| || | ||| ||||||||||||||||| ||||||||||||||||| | || |||||||||  |||||| || ||||||||    
T  51955 gagttgtttcagaaagcccataacaccaagaaccaaactcacaaatgactacaaatacatgtattaaattagtcattcattatgattataagccatatca 52054  T
Q  281 tcttagtgctactcattctaatatttcctttaacattgcactaagaagcatagccaa 337  Q
    |||||||| |||||| |||| ||| || |||  |||||||||||||| | |||||||    
T  52055 tcttagtgttactcaatctagtatatcttttgccattgcactaagaaacttagccaa 52111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 88 - 337
Target Start/End: Complemental strand, 14009806 - 14009553
Alignment:
Q  88 catctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgatagagttgt 187  Q
    ||||||||||||| ||| || ||||||||| ||||||||| ||||||| |||||| |||| |||||| | ||||||| || |||||| ||||||||||||    
T  14009806 catctgttcttgatgaattgtcaaatcactgtaaaggtgagttacctggttttaagccaaactcagagaaagcctctgaaatagctcatgatagagttgt 14009707  T
Q  188 tttagaaagcccacaataacaacaaccaaactcacaaatggct----acaaatacatgtattgatttggtcattcatcctgattacaaaccatatcatct 283  Q
    || |||||| |||||| ||||| ||||||||||| ||||| ||    |||||||| |||||||| || ||||||||| |||||||||| |||||||||||    
T  14009706 ttcagaaagtccacaacaacaagaaccaaactcaaaaatgactacaaacaaatacttgtattgaattagtcattcattctgattacaagccatatcatct 14009607  T
Q  284 tagtgctactcattctaatatttcctttaacattgcactaagaagcatagccaa 337  Q
    ||||||||||||||| | ||| || |||  |||||||||||||| | |||||||    
T  14009606 tagtgctactcattccagtatatcttttgccattgcactaagaaacttagccaa 14009553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 12396037 - 12396182
Alignment:
Q  84 gatccatctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgatagag 183  Q
    ||||||||||| ||||| |||||||| ||||||||| ||||||||||||| | |||||  |||| |||||||||||||||| ||||||||  ||||  ||    
T  12396037 gatccatctgtacttgaggaactggctaatcactatcaaggtgaattaccaggttttaggccaaactcagaaatagcctctgaagtagcttttgatgaag 12396136  T
Q  184 ttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    |||||| | ||||||| ||| |||| ||||| |||| |||||||||    
T  12396137 ttgtttcaaaaagcccccaacaacatcaaccgaacttacaaatggc 12396182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 16346045 - 16346123
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnnataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  16346045 aaatgaataaaatattcatttttcatgcatttttttataggtttccttccacatgcttaatgaacttttgatctcatca 16346123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 2310028 - 2310066
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  2310028 gtttccttccacatgcttaatgagctcttgatctcatca 2310066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15408716 - 15408637
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnnataggtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  15408716 aaatgaataaaatattcatttttcatgcatttttttataggtttccttccacatgcttaatgaacttttgatctcatcac 15408637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 24240876 - 24240925
Alignment:
Q  569 acaaagaaactcaaagtttcaacaaaaatggaggtacaaagttattattt 618  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  24240876 acaaagaaactcaaagttttaacaaaaatgaaggtacaaagttatcattt 24240925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 6050978 - 6051017
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  6050978 gtttccttccacatgcttaatgagcttttgatctcatcac 6051017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1354 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold1354
Description:

Target: scaffold1354; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 1440 - 1292
Alignment:
Q  81 agtgatccatctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgata 180  Q
    |||||||||||| | ||||| |||||| | ||||||||| ||||||||||||| | |||| | |||| |||||||| ||||||| || |||||  ||||     
T  1440 agtgatccatctttccttgaggaactgactaatcactatcaaggtgaattaccaggttttgagccaaactcagaaagagcctctgaaatagcttttgatg 1341  T
Q  181 gagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
     |||| ||||||||||||| ||| ||||  |||| ||||||||||||||    
T  1340 aagttattttagaaagcccccaacaacatgaacctaactcacaaatggc 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 10562 - 10483
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnnataggtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||    
T  10562 aaatgaataaaatattcatttttcatgcatttttt-ataggtttccttccacatgcttagtgaacttttgatctcatcaca 10483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 483 - 561
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnnataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    |||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||| ||||||||    
T  483 aaatgaataaaatattcatttttcatgcatttttttattggtttccttccacatgcttaatgaacttttgttctcatca 561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20418333 - 20418410
Alignment:
Q  1 aaatgaataaaatattcatttttcatgcannnnnnnataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||    
T  20418333 aaatgaataaaatattcatttttcatgcatttttt-ataggtttccttccacatgcttagtgaacttttgatctcatca 20418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 21627170 - 21627090
Alignment:
Q  149 ctcagaaatagcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    |||| ||| |||||||||||||||| | |||  ||||| |||||||||||||||| |||||  ||||||| ||||||||||    
T  21627170 ctcaaaaaaagcctctaaagtagcttcagatgaagttgctttagaaagcccacaacaacaaacaccaaacacacaaatggc 21627090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 30519039 - 30519078
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  30519039 gtttccttccacatgcttaatgagctcttgatctcatcac 30519078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 20415800 - 20415838
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  20415800 gtttccttccacatgcttaatgatctcttgatctcatca 20415838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 20420365 - 20420403
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  20420365 gtttccttccacatgcttaatgagctcttgatctcatca 20420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 61269 - 61086
Alignment:
Q  80 cagtgatccatctgttcttgaagaactggcaaatcactataaaggtgaattacctgattttaaaccaagctcagaaatagcctctaaagtagctcctgat 179  Q
    ||||||| ||||||||||||| |||||  | ||||||||||| ||||| ||||||| |||| |||| | |||||||| ||||| | |   ||  ||| ||    
T  61269 cagtgattcatctgttcttgatgaactatctaatcactataagggtgagttacctggttttgaacccaactcagaaaaagcctttgagacagaacctaat 61170  T
Q  180 agagttgttttagaaagcccacaataacaacaaccaaactcacaaatggctacaaatacatgtattgatttggtcattcatcct 263  Q
        |||| ||||||||||||||| |||| ||||| ||||||||||||||| ||||||| || | | | ||| |||||||||||    
T  61169 tctattgtcttagaaagcccacaacaacatcaacctaactcacaaatggctgcaaatacctgcactaacttgatcattcatcct 61086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 54575 - 54536
Alignment:
Q  40 ggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54575 ggtttccttccacatgcttaatgaacttttgatctcatca 54536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 18682292 - 18682369
Alignment:
Q  152 agaaatagcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    ||||| ||||||| |||||||| ||||| |||||  |||||||||| ||||| |||||  ||||||||||||||||||    
T  18682292 agaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaatggc 18682369  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 18719568 - 18719645
Alignment:
Q  152 agaaatagcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    ||||| ||||||| |||||||| ||||| |||||  |||||||||| ||||| |||||  ||||||||||||||||||    
T  18719568 agaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaatggc 18719645  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 18727854 - 18727931
Alignment:
Q  152 agaaatagcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    ||||| ||||||| |||||||| ||||| |||||  |||||||||| ||||| |||||  ||||||||||||||||||    
T  18727854 agaaaaagcctctgaagtagcttctgatggagttactttagaaagctcacaacaacaagcaccaaactcacaaatggc 18727931  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 18784942 - 18784807
Alignment:
Q  163 ctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggctacaaatacatgtattgatttggtcattcatcc 262  Q
    ||||| ||||| |||||  |||||| | ||||||||| ||| ||||  ||||||||| | |||||||  |||| || | |||||||||| ||||||| ||    
T  18784942 ctaaaatagcttctgatgaagttgtgtcagaaagcccccaacaacatgaaccaaacttaaaaatggcctcaaacacctatattgatttgatcattcaccc 18784843  T
Q  263 tgattacaaaccatatcatcttagtgctactcattc 298  Q
    || ||   ||||||||||||||| |||||| |||||    
T  18784842 tgtttttcaaccatatcatcttaatgctacacattc 18784807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 480
Target Start/End: Original strand, 23351153 - 23351195
Alignment:
Q  438 cctagctcctcaattcaaatcattcctcaaccacaaatcataa 480  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  23351153 cctagctcctcaactcaaatcattcctcaaccacaaaccataa 23351195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 16190354 - 16190274
Alignment:
Q  158 agcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggctacaaatac 238  Q
    ||||||| |||||||| |||||  ||||| |||||||||||| ||| |||||  |||||||||||| |||||  |||||||    
T  16190354 agcctctgaagtagcttctgatgaagttgctttagaaagcccccaacaacaagcaccaaactcacagatggccccaaatac 16190274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 26048062 - 26048020
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||    
T  26048062 ataggtttccttccacatgcttagtgaactcttgatttcatca 26048020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 35689993 - 35690035
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  35689993 ataggtttccttccacatgcttagtgaaatcttgatctcatca 35690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 21361518 - 21361474
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    |||| |||||||||||||||||| |||||| || |||||||||||    
T  21361518 atagttttccttccacatgcttagtgaactcttaatctcatcaca 21361474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 26047339 - 26047295
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    |||||||| ||| |||||||||| |||||| ||||||||||||||    
T  26047339 ataggttttctttcacatgcttattgaactcttgatctcatcaca 26047295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 13650817 - 13650740
Alignment:
Q  152 agaaatagcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    ||||| ||||||||||||||||||||||  ||||  |||||||||||| ||| |||||  ||||||  ||||||||||    
T  13650817 agaaaaagcctctaaagtagctcctgatgaagttactttagaaagcccccaacaacaagcaccaaatgcacaaatggc 13650740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 639
Target Start/End: Original strand, 5779332 - 5779375
Alignment:
Q  596 atggaggtacaaagttattatttataataatcattgcaattaca 639  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||    
T  5779332 atggcggtacaaagttataatttataataatcattgaaattaca 5779375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 22576107 - 22576178
Alignment:
Q  158 agcctctaaagtagctcctgatagagttgttttagaaagcccacaataacaacaaccaaactcacaaatggc 229  Q
    ||||||| |||||||| |||||  ||||| |||||||| ||| ||| |||||  ||||||||||||||||||    
T  22576107 agcctctgaagtagcttctgatgaagttgctttagaaaacccccaacaacaagcaccaaactcacaaatggc 22576178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 8105663 - 8105701
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  8105663 gtttccttccacatgcttaatgaacttatgatcacatca 8105701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 5994799 - 5994843
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||    
T  5994799 ataggtttccttccacatgtttattgaacccttgatctcatcaca 5994843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 3967 - 3999
Alignment:
Q  47 ttccacatgcttaatgaacttttgatctcatca 79  Q
    |||||||||||||||||||||||||||||||||    
T  3967 ttccacatgcttaatgaacttttgatctcatca 3999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 136089 - 136049
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  136089 gtttccttccacatgcttaatgagctcttgatctcatcaca 136049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 2500279 - 2500315
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcat 77  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2500279 gtttccttccacatgcttagtgaacttttgatctcat 2500315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 10664875 - 10664918
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| |||||| || ||||||||||    
T  10664875 ataggtttccttccacatgcttagtgaactcttaatctcatcac 10664918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 10714314 - 10714271
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| |||||| || ||||||||||    
T  10714314 ataggtttccttccacatgcttagtgaactcttaatctcatcac 10714271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 10879020 - 10879063
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| |||||| || ||||||||||    
T  10879020 ataggtttccttccacatgcttagtgaactcttaatctcatcac 10879063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 10928084 - 10928041
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcac 80  Q
    ||||||||||||||||||||||| |||||| || ||||||||||    
T  10928084 ataggtttccttccacatgcttagtgaactcttaatctcatcac 10928041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 1393391 - 1393353
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  1393391 gtttccttccacatgcttaatgagctcttgatctcatca 1393353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 14874093 - 14874129
Alignment:
Q  43 ttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  14874093 ttccttccacatgcttaatgagcttatgatctcatca 14874129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 17780136 - 17780092
Alignment:
Q  37 ataggtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    |||| |||| ||||||||||| |||||||| ||||||||||||||    
T  17780136 atagatttctttccacatgctcaatgaactcttgatctcatcaca 17780092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 2339 - 2375
Alignment:
Q  43 ttccttccacatgcttaatgaacttttgatctcatca 79  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  2339 ttccttccacatgcttaatgagcttatgatctcatca 2375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 5922 - 5882
Alignment:
Q  41 gtttccttccacatgcttaatgaacttttgatctcatcaca 81  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  5922 gtttctttccacatacttaatgagcttttgatctcatcaca 5882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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