View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_12 (Length: 439)
Name: NF5676_low_12
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Complemental strand, 35400916 - 35400494
Alignment:
| Q |
5 |
tgctcccaaattcttcatctaacgaggtggtattagtctcaggattacaagacaaagagatacgcaccatctccactcaaaatctaaagatattaggtat |
104 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400916 |
tgctcacaaattcttcatctaacgaggtcgtattagtctcaggattacaagacaaagagatacgcaccatctccactcaaaatctaaagatattaggtat |
35400817 |
T |
|
| Q |
105 |
acgagttctctatatatccaacatttagcatattcatgattgatgtttgactagtcactcacacttgagcccaacaagtacacaactcatgacttgtttc |
204 |
Q |
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| T |
35400816 |
atgagttctctctatatccaacatttagcatattcatgattgatgtttgactagtcactcacacttgagcccaacaagtacacaactcatgacttgtttc |
35400717 |
T |
|
| Q |
205 |
attggttgccaaagataatgaaattagataaaatccacattacattatgcaaatttatattcataagattgaaatgagtcacacttactttcttgccctc |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400716 |
attggttgccaaaggtaatgaaattagataaaatccacattacattatgcaaatttatattcataagattgaaatgagtcacacttactttcttgccctc |
35400617 |
T |
|
| Q |
305 |
caagcctctcaacagcatgcacaaaagataaatgaagatcaggagtccaacgaagcctaggcattttcgacctcacatattgtctaaccgtacttccacg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400616 |
caagcctctcaacagcatgcacaaaagataaatgaagatcaggagtccaacgaagcctaggcattttcgacctcacatattgtctaaccgtacttccacg |
35400517 |
T |
|
| Q |
405 |
cccttttccttcttcactagaat |
427 |
Q |
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| T |
35400516 |
cccttttccttcttcactagaat |
35400494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 393
Target Start/End: Original strand, 4926763 - 4926868
Alignment:
| Q |
288 |
cttactttcttgccctccaagcctctcaacagcatgcacaaaagataaatgaagatcaggagtccaacgaagcctaggcattttcgacctcacatattgt |
387 |
Q |
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|||||||||| | || ||||| || ||||||||||||| |||||| |||||| ||||||||||| | | ||||||||| || || || ||||| ||| |
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| T |
4926763 |
cttactttctagaccaccaagtctttcaacagcatgcaaaaaagaatgatgaagctcaggagtccaccttaacctaggcatcttggatctaacataatgt |
4926862 |
T |
|
| Q |
388 |
ctaacc |
393 |
Q |
| |
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|||||| |
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|
| T |
4926863 |
ctaacc |
4926868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 389
Target Start/End: Complemental strand, 35848405 - 35848302
Alignment:
| Q |
286 |
cacttactttcttgccctccaagcctctcaacagcatgcacaaaagataaatgaagatcaggagtccaacgaagcctaggcattttcgacctcacatatt |
385 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||||| ||| || |||||||||||||||||| |||||||||||||| || || || ||||||| |
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| T |
35848405 |
cacttactctcttggcctccaagcctttcaacagcatgcataaaggagtgatgaagatcaggagtccaccgaagcctaggcatctttgatctaacatatt |
35848306 |
T |
|
| Q |
386 |
gtct |
389 |
Q |
| |
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|||| |
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|
| T |
35848305 |
gtct |
35848302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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