View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_13 (Length: 429)

Name: NF5676_low_13
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_13
NF5676_low_13
[»] chr5 (30 HSPs)
chr5 (147-415)||(2617850-2618117)
chr5 (1-146)||(42630711-42630856)
chr5 (1-146)||(8323707-8323852)
chr5 (1-146)||(791713-791867)
chr5 (25-147)||(130253-130375)
chr5 (28-146)||(26534506-26534624)
chr5 (77-148)||(26534693-26534764)
chr5 (77-144)||(8323903-8323970)
chr5 (77-146)||(791592-791661)
chr5 (69-150)||(5146690-5146771)
chr5 (69-146)||(33377835-33377912)
chr5 (67-146)||(35454451-35454529)
chr5 (69-148)||(35454637-35454715)
chr5 (77-146)||(130443-130512)
chr5 (74-146)||(14388512-14388583)
chr5 (77-149)||(42630902-42630974)
chr5 (69-148)||(8489121-8489200)
chr5 (78-149)||(14069858-14069928)
chr5 (85-146)||(6518203-6518264)
chr5 (69-146)||(13823335-13823412)
chr5 (69-146)||(19898941-19899018)
chr5 (75-143)||(19897228-19897295)
chr5 (67-146)||(5146504-5146582)
chr5 (69-148)||(6518390-6518468)
chr5 (69-146)||(40881792-40881867)
chr5 (69-146)||(228717-228794)
chr5 (78-148)||(13823148-13823217)
chr5 (69-129)||(40882006-40882066)
chr5 (85-143)||(228987-229044)
chr5 (69-131)||(27319654-27319716)
[»] chr4 (14 HSPs)
chr4 (1-148)||(3102538-3102685)
chr4 (1-148)||(40533961-40534108)
chr4 (1-146)||(9231580-9231725)
chr4 (20-145)||(13690216-13690341)
chr4 (68-146)||(3102726-3102804)
chr4 (77-146)||(40534158-40534227)
chr4 (77-147)||(11147013-11147083)
chr4 (75-148)||(5121000-5121073)
chr4 (69-148)||(18381496-18381575)
chr4 (69-148)||(37177813-37177892)
chr4 (69-147)||(18936864-18936942)
chr4 (69-148)||(18936674-18936752)
chr4 (84-127)||(9231782-9231825)
chr4 (68-148)||(11147211-11147290)
[»] chr1 (26 HSPs)
chr1 (1-148)||(10227831-10227978)
chr1 (1-142)||(19059378-19059519)
chr1 (1-144)||(26551992-26552135)
chr1 (77-146)||(10227712-10227781)
chr1 (69-147)||(23346418-23346496)
chr1 (77-146)||(26552187-26552256)
chr1 (69-146)||(48871424-48871501)
chr1 (68-148)||(28217528-28217607)
chr1 (74-146)||(48752586-48752657)
chr1 (69-148)||(28217706-28217785)
chr1 (67-146)||(50893148-50893226)
chr1 (68-146)||(48871247-48871324)
chr1 (69-146)||(50892963-50893040)
chr1 (68-148)||(7062183-7062262)
chr1 (75-146)||(42180571-42180641)
chr1 (68-146)||(4156892-4156969)
chr1 (69-145)||(39669245-39669321)
chr1 (75-146)||(41834069-41834139)
chr1 (80-137)||(19059576-19059633)
chr1 (68-137)||(23346607-23346675)
chr1 (69-146)||(41833874-41833951)
chr1 (69-145)||(50904992-50905070)
chr1 (74-145)||(50905104-50905175)
chr1 (69-115)||(7062038-7062084)
chr1 (69-115)||(42180759-42180805)
chr1 (67-116)||(39669086-39669135)
[»] scaffold0214 (2 HSPs)
scaffold0214 (1-146)||(11746-11891)
scaffold0214 (69-142)||(11630-11703)
[»] chr3 (13 HSPs)
chr3 (1-146)||(33219072-33219217)
chr3 (2-144)||(10598810-10598952)
chr3 (1-148)||(36274244-36274391)
chr3 (28-147)||(33214585-33214704)
chr3 (1-147)||(27072912-27073051)
chr3 (77-147)||(33214442-33214512)
chr3 (77-146)||(27073103-27073172)
chr3 (69-146)||(36635425-36635502)
chr3 (69-148)||(19580497-19580576)
chr3 (77-146)||(36274120-36274188)
chr3 (84-146)||(10599000-10599062)
chr3 (78-143)||(36635241-36635305)
chr3 (83-146)||(11651000-11651063)
[»] chr2 (22 HSPs)
chr2 (1-146)||(31860079-31860224)
chr2 (1-146)||(42028697-42028842)
chr2 (1-148)||(7317633-7317780)
chr2 (1-146)||(16115163-16115308)
chr2 (1-146)||(13279840-13279978)
chr2 (1-146)||(2059490-2059627)
chr2 (77-148)||(13280030-13280101)
chr2 (77-148)||(36059282-36059353)
chr2 (77-146)||(42028578-42028647)
chr2 (80-148)||(7317833-7317901)
chr2 (80-148)||(31860283-31860351)
chr2 (69-148)||(15332849-15332928)
chr2 (77-147)||(2059679-2059749)
chr2 (67-145)||(3671822-3671899)
chr2 (77-146)||(16115046-16115115)
chr2 (69-146)||(31470587-31470663)
chr2 (77-146)||(38085967-38086035)
chr2 (67-146)||(31470763-31470841)
chr2 (69-146)||(38086154-38086231)
chr2 (89-146)||(15330449-15330505)
chr2 (69-146)||(3672010-3672087)
chr2 (116-147)||(36059247-36059278)
[»] chr8 (12 HSPs)
chr8 (1-146)||(37994708-37994853)
chr8 (1-148)||(44036812-44036959)
chr8 (68-146)||(2814430-2814508)
chr8 (77-146)||(37994903-37994972)
chr8 (69-146)||(14193512-14193588)
chr8 (69-148)||(397192-397271)
chr8 (77-148)||(41539966-41540036)
chr8 (77-147)||(41539769-41539839)
chr8 (68-149)||(2814240-2814320)
chr8 (78-146)||(397007-397074)
chr8 (69-149)||(14193321-14193400)
chr8 (80-130)||(25101746-25101796)
[»] chr6 (8 HSPs)
chr6 (1-147)||(33022163-33022309)
chr6 (77-145)||(33022363-33022431)
chr6 (68-145)||(7789856-7789933)
chr6 (68-148)||(21389208-21389287)
chr6 (69-146)||(21389021-21389098)
chr6 (68-135)||(7789678-7789744)
chr6 (67-145)||(29859735-29859813)
chr6 (69-145)||(28472548-28472624)
[»] scaffold0135 (2 HSPs)
scaffold0135 (1-146)||(37446-37591)
scaffold0135 (84-127)||(37648-37691)
[»] chr7 (11 HSPs)
chr7 (8-146)||(19804797-19804935)
chr7 (69-146)||(7298635-7298712)
chr7 (69-146)||(40521203-40521280)
chr7 (77-148)||(19805609-19805680)
chr7 (75-149)||(40521013-40521086)
chr7 (67-146)||(28948991-28949069)
chr7 (78-148)||(7298833-7298902)
chr7 (68-146)||(16979604-16979681)
chr7 (74-143)||(46567960-46568028)
chr7 (69-120)||(46568145-46568196)
chr7 (67-137)||(47478370-47478436)
[»] scaffold0140 (1 HSPs)
scaffold0140 (68-147)||(15846-15925)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 147 - 415
Target Start/End: Complemental strand, 2618117 - 2617850
Alignment:
Q  147 ttgagtgtgacttgttgtcaacttagtgtataaatatattattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618117 ttgagtgtgacttgttgtcaacttagtgtataaatatattattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagat 2618018  T
Q  247 aatctactagtacttgtacaacacaatttgttaaagaaacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618017 aatctactagtacttgtacaacacaatttgttaaagaaacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcg 2617918  T
Q  347 tggggctacattaaaaccataaatagcaaatgaataaaaccattgggtatctatttctacattttgagt 415  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2617917 tggggctacattaaaaccataaatagcaaatgaat-aaaccattgggtatctatttctacattttgagt 2617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42630856 - 42630711
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  42630856 ctctctctccagcaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttagtttgttg 42630757  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  42630756 tttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8323852 - 8323707
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||    
T  8323852 ctctctctccaccaccactaactcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttattg 8323753  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  8323752 tttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 791713 - 791867
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgt---------ttt 91  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||    
T  791713 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttt 791812  T
Q  92 aatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  791813 aatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 130375 - 130253
Alignment:
Q  25 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  130375 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggtt 130276  T
Q  125 cgttcctacacaagaatttctct 147  Q
    |||||||||||||||||||||||    
T  130275 cgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 26534624 - 26534506
Alignment:
Q  28 atcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26534624 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 26534525  T
Q  128 tcctacacaagaatttctc 146  Q
    |||||||||||||||||||    
T  26534524 tcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 26534693 - 26534764
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26534693 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 26534764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 8323903 - 8323970
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8323903 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 791661 - 791592
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  791661 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 5146690 - 5146771
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttga 150  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctcttga 5146771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 33377835 - 33377912
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 35454529 - 35454451
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 35454637 - 35454715
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttttctt 35454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 130443 - 130512
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  130443 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 42630902 - 42630974
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttg 149  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  42630902 gacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaatttttcttg 42630974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 8489200 - 8489121
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctctt 8489121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 14069928 - 14069858
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttg 149  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgatag-ttaggttcgttcctacacaagaatttctcttg 14069858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 6518264 - 6518203
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 13823335 - 13823412
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||||||||||||||||||| |||||||  |||||| |||| |||||||||||||||||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 19898941 - 19899018
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||| ||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 5146582 - 5146504
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  5146582 gaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 6518390 - 6518468
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||| || |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctctt 6518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 40881867 - 40881792
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||| ||||||||||| || ||  ||||||||||||||||||||| ||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 228794 - 228717
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||| ||||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||  ||||||||    
T  228794 aaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 13823217 - 13823148
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||| ||| |||||| || | ||||||| |||||||||||||||||||||||||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctctt 13823148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 40882006 - 40882066
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttc 129  Q
    |||| ||| ||||||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  40882006 aaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  85 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 143  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 27319654 - 27319716
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcct 131  Q
    |||| ||||| || |||| ||||||||||||||||||||| |||||| ||||| || ||||||    
T  27319654 aaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3102685 - 3102538
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  3102685 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttg 3102586  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3102585 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 3102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 40534108 - 40533961
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||    
T  40534108 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttgttg 40534009  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  40534008 tttgtaagaatgataggttaggttcgttcctacacaagaatttctctt 40533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9231725 - 9231580
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  9231725 ctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 9231626  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  9231625 tttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 13690341 - 13690216
Alignment:
Q  20 agttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggtt 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  13690341 agttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggtt 13690242  T
Q  120 aggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||||||||||||    
T  13690241 aggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 3102726 - 3102804
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 40534158 - 40534227
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40534158 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 11147083 - 11147013
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctct 11147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 5121000 - 5121073
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctctt 5121073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 18381496 - 18381575
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||| ||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  18381496 aaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctctt 18381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 37177813 - 37177892
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctctt 37177892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 18936864 - 18936942
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||  ||||||||||||||| ||||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctct 18936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 18936752 - 18936674
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctctt 18936674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 11147211 - 11147290
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||| |||||| |||||| ||||||||| ||||||||||| || ||| ||||| |||||| ||||| |||||||| ||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaatttttctt 11147290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10227831 - 10227978
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10227831 ctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgatgtgtcatgttttaatttgttg 10227930  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227931 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 10227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 19059519 - 19059378
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| || ||||||||||||||||||||||||    
T  19059519 ctctctctccacaaccactagttcgtgatcttccatcaccattcaccaccaccaccattcatagtggaaaaacaacgacgtgtcatgttttaatttgttg 19059420  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19059419 tttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26552135 - 26551992
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||| ||||||||| |||    
T  26552135 ctctctctccaccgccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgccatattttaattttttg 26552036  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttc 144  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  26552035 tttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 10227781 - 10227712
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10227781 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 23346496 - 23346418
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 23346418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 26552187 - 26552256
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26552187 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 48871424 - 48871501
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  48871424 aaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 28217607 - 28217528
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctctt 28217528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 28217706 - 28217785
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  28217706 aaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctctt 28217785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 50893148 - 50893226
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  50893148 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 48871324 - 48871247
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 50893040 - 50892963
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||| ||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 7062183 - 7062262
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||| ||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctctt 7062262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 4156969 - 4156892
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 39669245 - 39669321
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    |||| ||| |||||||||||||||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||    
T  39669245 aaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 19059576 - 19059633
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 137  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  19059576 gtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 137  Q
    ||||| |||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 41833951 - 41833874
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||  |||| |||||| ||| |||||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatg--ataggttaggttcgttcctacacaagaatttct 145  Q
    |||| |||||||||||||||||||| |||||||||||||  |||  |||  ||||||||||||||||||||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 50905104 - 50905175
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||  ||||||| |||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgata 115  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 42180759 - 42180805
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgata 115  Q
    |||| ||||| ||||||||||||| ||||||||||||||| ||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 39669135 - 39669086
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgatag 116  Q
    |||||| |||||||| |||| ||||||||| ||||||||||| |||||||    
T  39669135 gaaaaaaaatgacgtatcatattttaatttattgtttgtaagaatgatag 39669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 11746 - 11891
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  11746 ctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttg 11845  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11846 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 11703 - 11630
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 142  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11703 aaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33219217 - 33219072
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  33219217 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgacgaatcatgttttaatttgttg 33219118  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33219117 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 10598952 - 10598810
Alignment:
Q  2 tctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgt 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  10598952 tctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgt 10598853  T
Q  102 ttgtaaggatgataggttaggttcgttcctacacaagaatttc 144  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  10598852 ttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 36274244 - 36274391
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  36274244 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 36274343  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  36274344 tttgtaaagatgataggttagattcgttcctacataagaatttctctt 36274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 33214585 - 33214704
Alignment:
Q  28 atcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33214585 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 33214684  T
Q  128 tcctacacaagaatttctct 147  Q
    ||||||||||||||||||||    
T  33214685 tcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 27073051 - 27072912
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||| || ||       |||||||||||||||    
T  27073051 ctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttg 27072959  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27072958 tttgtaaggatgatagattaggttcgttcctacacaagaatttctct 27072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 33214512 - 33214442
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33214512 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 33214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 27073103 - 27073172
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073103 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 36635425 - 36635502
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 19580497 - 19580576
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctctt 19580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 36274188 - 36274120
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  36274188 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 143  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 11651063 - 11651000
Alignment:
Q  83 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||| |||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  11651063 tcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31860224 - 31860079
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31860224 ctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttg 31860125  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||    
T  31860124 tttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42028697 - 42028842
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  42028697 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttg 42028796  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42028797 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 7317780 - 7317633
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  7317780 ctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttagtttgttg 7317681  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    || |||||||||||||||||||||||||||||||||| | ||||||||    
T  7317680 ttagtaaggatgataggttaggttcgttcctacacaaaagtttctctt 7317633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 16115163 - 16115308
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  16115163 ctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatattttagtttgttg 16115262  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  16115263 tttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13279978 - 13279840
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||| || ||       |||||||||||||||    
T  13279978 ctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttg 13279886  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  13279885 tttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2059627 - 2059490
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||| || ||||||||| |||| |||||||||||||||||        |||||||| ||||| ||||||| ||||| |||||||    
T  2059627 ctctctctccaccaccactaattcgtgatcttctatcatcattcaccaccaacacc--------tggaaaaacaatgaagtgtcatattttagtttgttg 2059536  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  2059535 tttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 13280030 - 13280101
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280030 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 13280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 36059282 - 36059353
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctctt 36059353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 42028647 - 42028578
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42028647 gacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 7317833 - 7317901
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 7317901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 31860283 - 31860351
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctctt 31860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 15332849 - 15332928
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctt 15332928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 2059679 - 2059749
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2059679 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctct 2059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 3671899 - 3671822
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671899 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 16115115 - 16115046
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  16115115 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 31470663 - 31470587
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 38086035 - 38085967
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  38086035 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 31470763 - 31470841
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  31470763 gaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 38086154 - 38086231
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||| |||| ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  89 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 3672010 - 3672087
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||||| || |||||||||||| |||||||  ||||||  |||| ||||||||| || |||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 36059278 - 36059247
Alignment:
Q  116 ggttaggttcgttcctacacaagaatttctct 147  Q
    ||||||||||||||||||||||||||||||||    
T  36059278 ggttaggttcgttcctacacaagaatttctct 36059247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37994853 - 37994708
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||| |||    
T  37994853 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttattg 37994754  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37994753 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 44036959 - 44036812
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  44036959 ctctctctccaccaccactagttcgtgatcttccatcaccactcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgtttgaatttgttg 44036860  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  44036859 tttgtaaggatgataggttaggttcgtccctacacatgaatttctctt 44036812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 2814430 - 2814508
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 37994903 - 37994972
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37994903 gacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 397192 - 397271
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctctt 397271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 41539966 - 41540036
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  41539966 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 41540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 41539839 - 41539769
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  41539839 gacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 41539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 2814320 - 2814240
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttg 149  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  2814320 aaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctcttg 2814240  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 397074 - 397007
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  397074 acgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 14193400 - 14193321
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttg 149  Q
    |||| ||||| ||||||||||||||||||||||||||||  || ||| |||||||||||||||| |||| |||||||||||    
T  14193400 aaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctcttg 14193321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 25101796 - 25101746
Alignment:
Q  80 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcc 130  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  25101796 gtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

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Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 33022309 - 33022163
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  33022309 ctctctctccaccaccactagttcatgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 33022210  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  33022209 tttgtaaggatgataggttaggttcgttcctacacaataatttctct 33022163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 33022363 - 33022431
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33022363 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 21389208 - 21389287
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttatctt 21389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 21389098 - 21389021
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacac 135  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 29859735 - 29859813
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    |||||| ||| |||||| ||| ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  29859735 gaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 28472548 - 28472624
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 145  Q
    |||| ||| |||||| ||| ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  28472548 aaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37591 - 37446
Alignment:
Q  1 ctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttg 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  37591 ctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttg 37492  T
Q  101 tttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  37491 tttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  84 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 19804935 - 19804797
Alignment:
Q  8 tccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaagaatgacgtgtcatgttttaatttgttgtttgtaa 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| || || ||||| ||||| ||||||||||||||||    
T  19804935 tccaccaccactagttcgtgatcttccatcaccattcaccaccaacatcattcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaa 19804836  T
Q  108 ggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  19804835 ggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 7298712 - 7298635
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 40521203 - 40521280
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521203 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 19805609 - 19805680
Alignment:
Q  77 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  19805609 gacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctctt 19805680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 40521086 - 40521013
Alignment:
Q  75 atgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttg 149  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcttg 40521013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 28948991 - 28949069
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 7298833 - 7298902
Alignment:
Q  78 acgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 148  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 7298902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 16979604 - 16979681
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 146  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  74 aatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 143  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 46568145 - 46568196
Alignment:
Q  69 aaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggtta 120  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  46568145 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 47478436 - 47478370
Alignment:
Q  67 gaaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 137  Q
    |||||| ||||| |||||||||   ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47478436 gaaaaaaaatgatgtgtcatgt---aatttgttgtttgtaagaatgata-gttaagttcgtttctacacaa 47478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 15925 - 15846
Alignment:
Q  68 aaaaagaatgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 147  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  15925 aaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 15846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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