View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676_low_14 (Length: 411)
Name: NF5676_low_14
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 43217065 - 43217404
Alignment:
| Q |
18 |
tataccaaatagatcagccatgtatttcggttatgctcaatatatgctaacaacgaagaatgctacattgggaaaacagaatgattcatcgtcagcatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217065 |
tataccaaatagatcagccatgtatttcggttatgctcaatatatgctaacaacgaagaatgctacattgggaaaacagaatgattcatcgtcagcatgg |
43217164 |
T |
|
| Q |
118 |
agtgaactctaccagaaaaaactctcggaagccgccgacctcccaacgcgaatattggctttccgcaacaaaccctcaaaccctaaaaatactcttt--- |
214 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217165 |
agtgaactctaccagaaaatactcttggaagccgccaacctcccaacgcgaatattggctttccgcaacaaaccctcaaaccctaaaaatactctttctc |
43217264 |
T |
|
| Q |
215 |
------ctcctcctcctcaatccaatccctcaaaatctagacacattcctcatgtaacnnnnnnnnatatgctcaataatatttttaggtttaaataagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
43217265 |
ctcctcctcctcctcctcaatccaatccctcaaaatctagacacattcctcatgtaactcttttttatatgctcaataatattttta-gtttaaataagt |
43217363 |
T |
|
| Q |
309 |
atttagtctccggtaaaataaacactttttgctttaagtcc |
349 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43217364 |
atttagtctccggtaaaataaacaccttttgctttaagtcc |
43217404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University