View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_15 (Length: 406)
Name: NF5676_low_15
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 44520422 - 44520802
Alignment:
| Q |
18 |
gatctaagatcactttgagggtaagcactaagagtgtatgaaatctaccagattttaagcaaatttctgtcatatgcatctttcaaatcttgaatgaaat |
117 |
Q |
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| T |
44520422 |
gatctaagatcactttgagggtaagcactaagagtgtatgaaatctaccagattttaagcaaatttctgtcatatgcatctttcaaatcttgaatgaaat |
44520521 |
T |
|
| Q |
118 |
gtgtcgtattgaaaatgtttattattatttgttttatagatcttaggagcaatagttgcaccacgaaaccctgatgtatggcatggtttaaataagcgca |
217 |
Q |
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| T |
44520522 |
gtgtcgtattgaaaatgtttattattatttgttttatagatcttaggagcaatagttgcaccacgaaaccctgatgtatggcatggtttaaataagcgca |
44520621 |
T |
|
| Q |
218 |
aatggatttacttccacggggtgaatcacctttctgtagaaggtggagggagaatagatggaatgggacaggaatggtggtccagatcttgcaagatcaa |
317 |
Q |
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| T |
44520622 |
aatggatttacttccacggggtgaatcacctttctgtagaaggtggagggagaatagatggaatgggacaggaatggtggtccagatcttgcaagatcaa |
44520721 |
T |
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| Q |
318 |
caccactaatgtattgctatctcagaaacttattttcatatgtagttgaagtttatgcatcggtttaactaagtgatgatg |
398 |
Q |
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| T |
44520722 |
caccactaatgtattgctatctcagaaacttattttcatatgtagttgaagtttatgcatcggtttaactaagtgatgatg |
44520802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 46961145 - 46960757
Alignment:
| Q |
18 |
gatctaagatcactttgagggtaagcactaagagtgtatgaaatctaccagattttaagcaaatttctgtcatatgcatctttcaaatcttgaatgaaat |
117 |
Q |
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|||| ||||||||||||||||||||||| ||||| || | |||||| |||||||| ||| |||||||| |||||||||||||| || |||||||| | |
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| T |
46961145 |
gatcaaagatcactttgagggtaagcaccaagagcgtgtaaaatctctgtgattttaaacaagtttctgtcgtatgcatctttcaattcctgaatgaagt |
46961046 |
T |
|
| Q |
118 |
gtgtcgtattgaaaatgtttatt--------attatttgtt-----ttatagatcttaggagcaatagttgcaccacgaaaccctgatgtatggcatggt |
204 |
Q |
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| T |
46961045 |
gtatcttttggaaaatatttatttacttatgactatttataatttattatagatctcaggaacaatagttgcaccgcaagatcctgaggtatggaatggc |
46960946 |
T |
|
| Q |
205 |
ttaaataagcgcaaatggatttacttccacggggtgaatcacctttctgtagaaggtggagggagaatagatggaatgggacaggaatggtggtccagat |
304 |
Q |
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|||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
46960945 |
ttaaataagcgcaagtgaatttacatccacggggtgaatcacctttctgtaggtggtggggggagaatagatggaatgggacaagaatggtggtccagat |
46960846 |
T |
|
| Q |
305 |
cttgcaagatcaacaccactaatgtattgctatctcagaaacttattttcatatgtagttgaagtttatgcatcggtttaactaagtgat |
394 |
Q |
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|||||||||| |||||||| ||||||||||| ||||| ||||||| |||| ||| || ||||||||||| |||| ||| ||||||||||| |
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| T |
46960845 |
cttgcaagattaacaccacaaatgtattgctttctcacaaacttaatttcgtat-taattgaagtttattcatcagttaaactaagtgat |
46960757 |
T |
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