View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_16 (Length: 386)

Name: NF5676_low_16
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_16
NF5676_low_16
[»] chr6 (13 HSPs)
chr6 (1-373)||(6394355-6394726)
chr6 (166-337)||(14820140-14820311)
chr6 (1-113)||(14820443-14820555)
chr6 (6-99)||(6589565-6589658)
chr6 (30-127)||(14818152-14818248)
chr6 (3-70)||(6423010-6423077)
chr6 (264-338)||(6426035-6426109)
chr6 (1-74)||(10579974-10580047)
chr6 (45-116)||(6426279-6426350)
chr6 (1-75)||(19632227-19632301)
chr6 (3-63)||(7119002-7119062)
chr6 (3-63)||(7131480-7131540)
chr6 (326-370)||(14820083-14820127)
[»] chr7 (2 HSPs)
chr7 (1-129)||(15092388-15092515)
chr7 (252-297)||(15092659-15092704)
[»] chr1 (3 HSPs)
chr1 (131-373)||(49218728-49218976)
chr1 (64-113)||(49219072-49219121)
chr1 (17-117)||(33160474-33160578)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 6394726 - 6394355
Alignment:
Q  1 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6394726 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctgagaaattt 6394627  T
Q  101 cctttttaaaatgtcaatcttacaaatttaaaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaataatgccgat 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  6394626 cctttttaaaatgtca-tcttacaaatttaaaaggctaggccatggccggatggtggatttttgacaaccattttagtcaatttgtgaaataatgccgat 6394528  T
Q  201 gcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394527 gcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaacttgaaagttaatatgaagtaaataaggcatatggc 6394428  T
Q  301 atatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394427 atatgaattgattaatgatatgtgtttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 6394355  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 14820311 - 14820140
Alignment:
Q  166 caaccatttcagtcaatttgtgaaataatgccgatgcccaacatggcagcgtcataagtcgcaactctgcagtcaaacttactttgtattttaatccaac 265  Q
    ||||||||  ||||||||||| ||  ||||| |||||| || ||||| ||| || |||||||||||| |  |||||||||| ||| |||||| || ||||    
T  14820311 caaccattgtagtcaatttgtaaaggaatgctgatgcctaatatggcggcgccaaaagtcgcaactcagtggtcaaacttaatttatattttgattcaac 14820212  T
Q  266 ttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgat 337  Q
    ||||||| ||||||  ||||||||| |  ||| || ||||||||||||||||||||||||||||||||||||    
T  14820211 ttgaaagctaatatatagtaaataatgtgtatagcttatgaattgattaatgatatgtgtttgaagtatgat 14820140  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14820555 - 14820443
Alignment:
Q  1 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaattt 100  Q
    ||||||||||| | | |||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||| || |||||| ||||| |||| ||     
T  14820555 cgtcgtggatgtcatctttgctagtattatgaaattgcgttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctctgagaatttg 14820456  T
Q  101 cctttttaaaatg 113  Q
    |||||||||||||    
T  14820455 cctttttaaaatg 14820443  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 6589565 - 6589658
Alignment:
Q  6 tggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatt 99  Q
    |||||||| | ||| ||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||| || ||| |||||||| |||||||    
T  6589565 tggatgccatctttactagtattctgaaattgctgtgctaaagtatgaacactgtaagttgtttttgttttaatattcacttctctgagaaatt 6589658  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 14818248 - 14818152
Alignment:
Q  30 tgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtcaatcttacaaat 127  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| ||| | |||| || ||||||||||||| | |||||||||||    
T  14818248 tgaaattgctttgctgaagtttgaacactgtaagttgtttttgttttaagatttacatctttgagaatttgcctttttaaaatgac-atcttacaaat 14818152  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 6423077 - 6423010
Alignment:
Q  3 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttt 70  Q
    ||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  6423077 tcgtggatgccttctttgctagtattctgaaatttctatgctaaagtttgaacactgtaagttgtttt 6423010  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 6426109 - 6426035
Alignment:
Q  264 acttgaaagttaatatgaagtaaataaggcatatggcatatgaattgattaatgatatgtgtttgaagtatgata 338  Q
    ||||||||| |||||||||  ||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  6426109 acttgaaagctaatatgaacaaaataaggcatatagcttatgaattgactaatgatatgtgtttgaagtgtgata 6426035  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10579974 - 10580047
Alignment:
Q  1 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtt 74  Q
    |||| |||||||| | |||||||||||||| ||| ||||| |||||||||||||| ||||||||| ||||||||    
T  10579974 cgtcatggatgccttctttgctagtattctaaaaatgctacgctgaagtttgaactctgtaagttgtttttgtt 10580047  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 6426350 - 6426279
Alignment:
Q  45 gaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatgtca 116  Q
    |||||||||||| |||||||| ||||||||| |  |||||||||||| ||||||  ||||||||||||||||    
T  6426350 gaagtttgaacattgtaagttgtttttgttttatgatttacttctctgagaaatagcctttttaaaatgtca 6426279  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19632301 - 19632227
Alignment:
Q  1 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgttt 75  Q
    |||| |||||||| | ||||||||||||| |||| ||||||  |||||||||||| ||||||||| |||||||||    
T  19632301 cgtcatggatgccttctttgctagtattccgaaaatgctattatgaagtttgaaccctgtaagttgtttttgttt 19632227  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7119062 - 7119002
Alignment:
Q  3 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 63  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7119062 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7119002  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7131540 - 7131480
Alignment:
Q  3 tcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaag 63  Q
    ||||||||| | | |||||||||||| |  |||||||||| |||||||| |||||||||||    
T  7131540 tcgtggatgtcttctttgctagtattatttaattgctatgttgaagtttaaacactgtaag 7131480  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 14820127 - 14820083
Alignment:
Q  326 ttgaagtatgataactcaagtatgtttaacttgataatatgtgta 370  Q
    ||||||||||| ||||| || ||||||||||||||| ||||||||    
T  14820127 ttgaagtatgaaaactctagaatgtttaacttgatattatgtgta 14820083  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 15092388 - 15092515
Alignment:
Q  1 cgtcgtggatgccgtatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaacatttacttctctaagaaattt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  15092388 cgtcgtggatgccatatttgctagtattctgaaattgctatgctgaagtttgaacactgtaagttctttttgtttcaagatttacttctctgagaaattt 15092487  T
Q  101 cctttttaaaatgtcaatcttacaaattt 129  Q
    ||||||||||||||| ||||| |||||||    
T  15092488 cctttttaaaatgtc-atctttcaaattt 15092515  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 15092659 - 15092704
Alignment:
Q  252 tattttaatccaacttgaaagttaatatgaagtaaataaggcatat 297  Q
    |||||| || ||||||||||| |||||| |||||||||||||||||    
T  15092659 tattttgattcaacttgaaagctaatataaagtaaataaggcatat 15092704  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 49218976 - 49218728
Alignment:
Q  131 aaaggctaggccatggccggatgatggatttttgacaaccatttcagtcaatttgtgaaat-aatgccgatgcccaacatggcagcgtcataagtcgcaa 229  Q
    |||||||| |||||||  |||||| |||| ||| ||||||||| |||||||||| |||    |||||||||||||| ||||||||||  ||| |||||||    
T  49218976 aaaggctacgccatggtaggatgacggatgtttaacaaccattgcagtcaatttatgattggaatgccgatgcccaccatggcagcgctatatgtcgcaa 49218877  T
Q  230 ctctgcagtcaaacttactttgtattttaatccaacttgaaagttaata-----tgaagtaaataaggcatatggcatatgaattgattaatgatatgtg 324  Q
     || || ||||| | || |||| ||||| || ||||||||||| | |||     ||||||||||||||||||| || ||||||||||||||||||||||     
T  49218876 ttcagctgtcaagcataatttgaatttttattcaacttgaaagctgatatgaagtgaagtaaataaggcatatagcttatgaattgattaatgatatgta 49218777  T
Q  325 tttgaagtatgataactcaagtatgtttaacttgataatatgtgtacct 373  Q
    ||||  |||||||||||||  || |||||||||||||||||||| ||||    
T  49218776 tttggggtatgataactcatataagtttaacttgataatatgtgcacct 49218728  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 49219121 - 49219072
Alignment:
Q  64 ttctttttgtttcaacatttacttctctaagaaatttcctttttaaaatg 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49219121 ttctttttgtttcaagatttacttctctaagaaatttcctttttaaaatg 49219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 33160578 - 33160474
Alignment:
Q  17 tttgctagtattctgaaattgctatgctgaagttt----gaacactgtaagttctttttgtttcaacatttacttctctaagaaatttcctttttaaaat 112  Q
    |||||||||||| ||||| ||||||||| ||||||    ||||  |||||||| |||||| || || |||||||||||| ||||||| | ||||||||||    
T  33160578 tttgctagtattatgaaagtgctatgctcaagtttcattgaactttgtaagttgtttttgctttaagatttacttctctgagaaattacttttttaaaat 33160479  T
Q  113 gtcaa 117  Q
    |||||    
T  33160478 gtcaa 33160474  T

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