View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_18 (Length: 375)
Name: NF5676_low_18
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_18 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 375
Target Start/End: Complemental strand, 2516183 - 2515817
Alignment:
| Q |
9 |
ggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgtattgttatgttgtcaattttttcaaatcctttc |
108 |
Q |
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| T |
2516183 |
ggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgttttgttatgttgtcaattttttcaaatcttttc |
2516084 |
T |
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| Q |
109 |
tagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgt |
208 |
Q |
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| T |
2516083 |
tagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgt |
2515984 |
T |
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| Q |
209 |
aatcttttatggtgttattgttagagaataaaagcatttaattccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatt |
308 |
Q |
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| T |
2515983 |
aatcttttatggtgttattgttagagaataaaagcatttacttccttttctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatt |
2515884 |
T |
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| Q |
309 |
tgctacttttctgcgttcacatgtatggtatactacaacaccgacacatcacatgtgattacattca |
375 |
Q |
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| T |
2515883 |
tgctacttttctgcattcacatgtatggtatactccaacaccgacacatcacatgtgattacattca |
2515817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 2496613 - 2496344
Alignment:
| Q |
6 |
agtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaatagaaagcatttgtttttcctatgtattgttatgttgtcaatt-ttttcaaatcc |
104 |
Q |
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| T |
2496613 |
agtggtcgcaatgttggtaaacaagtggttgtcgttgctcgggaatagaaagcatttgcttttcctatgtattgttatgttgtcaatttttttcaaatct |
2496514 |
T |
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| Q |
105 |
tttctagaaagtttagctgtctttataccaccttggtagtcatcttttttcatatctatgaat-----atatgatgaga-ctgtgttcctgataatccag |
198 |
Q |
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||| ||||| |||||| ||||||| |||||| || | ||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| | ||| |
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| T |
2496513 |
tttatagaatgtttagttgtctttgtaccacttttgcagtcatc-tttttcatatgtatgaatgtatgatatgatgagacctgtgttcctgatagttcag |
2496415 |
T |
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| Q |
199 |
ggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttaattccttttctgcattgtcatct |
271 |
Q |
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| T |
2496414 |
ggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgcttgcctttgtgcattgtcatct |
2496344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 2432807 - 2432853
Alignment:
| Q |
5 |
cagtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
51 |
Q |
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| T |
2432807 |
cagtggtcgcaatgttggtaaacaagtggttgttgttgctcatgaat |
2432853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 2436169 - 2436214
Alignment:
| Q |
6 |
agtggtcgcaatgttggtaaacaagtggttgttgttgctcgtgaat |
51 |
Q |
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| T |
2436169 |
agtggtcgcaatgttggtaaacaagtggttgctgttgctcatgaat |
2436214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 2429826 - 2429865
Alignment:
| Q |
6 |
agtggtcgcaatgttggtaaacaagtggttgttgttgctc |
45 |
Q |
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| T |
2429826 |
agtggtcaaaatgttggtaaacaagtggttgttgttgctc |
2429865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 2505285 - 2505249
Alignment:
| Q |
15 |
aatgttggtaaacaagtggttgttgttgctcgtgaat |
51 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
2505285 |
aatgttggcaaacaagtgcttgttgttgctcgtgaat |
2505249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 2511906 - 2511870
Alignment:
| Q |
15 |
aatgttggtaaacaagtggttgttgttgctcgtgaat |
51 |
Q |
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| T |
2511906 |
aatgttggcaaacaagtgcttgttgttgctcgtgaat |
2511870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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