View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_19 (Length: 370)
Name: NF5676_low_19
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2515831 - 2515484
Alignment:
| Q |
1 |
atgtgattacattcaatcagnnnnnnnctcgacgcgtcctgtgtttgtgtcggtacttcataggttctaaatttccctaattacaataacaacaatcaag |
100 |
Q |
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| T |
2515831 |
atgtgattacattcaatcagtttttttctcgacgcgtcctgtgtttgtgtcggtacttcataggttctaaatttccctaattacaataacaacaatcaag |
2515732 |
T |
|
| Q |
101 |
gtctaagttcgccaaatatcttacaaaatttcagttatggaagaagtgtatacgtagttagcctaaatgaggagaattgtagcagccagcaggaaccatt |
200 |
Q |
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| T |
2515731 |
gtcttagttcaccaaatatcttacaatatttcagttatggaagaagtgtatacgtagttagcctaaatgaggagaaatgtagcagccagcaggaaccatt |
2515632 |
T |
|
| Q |
201 |
aaagcaaatggattggatgatttttatgttcagtggatgaattgaattagattattttaaacaaattttagtggatttttaatggatcaatgaattgttt |
300 |
Q |
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| T |
2515631 |
aaagcaaatggattggatgatttttatgttcagtggatgaattgaattagattattttaaacaaattttagtggatttttaatggatcaatgaattgttt |
2515532 |
T |
|
| Q |
301 |
taatctcttagttcaaatccattcaatttatcaattttgtcaccccta |
348 |
Q |
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| T |
2515531 |
taatctcttagttcaaatccattcaatttatcaattttgtcaccccta |
2515484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 2517070 - 2517022
Alignment:
| Q |
56 |
cttcataggttctaaatttccctaattacaataacaacaatcaaggtct |
104 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2517070 |
cttcataggttttgaatttccctaattacaataacaacaatcaaggtct |
2517022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 14664653 - 14664618
Alignment:
| Q |
266 |
ttttagtggatttttaatggatcaatgaattgtttt |
301 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
14664653 |
ttttagtggatttttaatggattaatgaattgtttt |
14664618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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