View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_22 (Length: 352)
Name: NF5676_low_22
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 3800698 - 3801036
Alignment:
| Q |
1 |
ttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaatt |
100 |
Q |
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| T |
3800698 |
ttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggatggaatt |
3800797 |
T |
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| Q |
101 |
ctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagac |
200 |
Q |
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| T |
3800798 |
ctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtgatgtgtggaagac |
3800897 |
T |
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| Q |
201 |
tggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggcaatg |
300 |
Q |
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| T |
3800898 |
tggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatgacataaaggcaatg |
3800997 |
T |
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| Q |
301 |
cgtttgaaaatgaagaaaatgactattaataatatagaa |
339 |
Q |
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| T |
3800998 |
tgtttgaaaatgaagaaaatgactattactaatatagaa |
3801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3789409 - 3789071
Alignment:
| Q |
1 |
ttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
3789409 |
ttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaatt |
3789310 |
T |
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| Q |
101 |
ctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagac |
200 |
Q |
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| T |
3789309 |
ccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagac |
3789210 |
T |
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| Q |
201 |
tggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggcaatg |
300 |
Q |
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| T |
3789209 |
tggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggaaatg |
3789110 |
T |
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| Q |
301 |
cgtttgaaaatgaagaaaatgactattaataatatagaa |
339 |
Q |
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| T |
3789109 |
tgtttgaaaatgaagaaaatgactattactaatatagaa |
3789071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 3780346 - 3780122
Alignment:
| Q |
6 |
tggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctacc |
105 |
Q |
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| T |
3780346 |
tggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctacc |
3780247 |
T |
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| Q |
106 |
atagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggac |
205 |
Q |
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| T |
3780246 |
gtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtttgtgatgtgtggaaggttggac |
3780147 |
T |
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| Q |
206 |
ttgaattagagaaagatgatgatgg |
230 |
Q |
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| T |
3780146 |
ttgaactagacaaggatgaagatgg |
3780122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 3768025 - 3767850
Alignment:
| Q |
49 |
atattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccat |
148 |
Q |
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|||||||| ||||| || || ||||| || || ||||||||||| ||||||||||| |||||||||||| || ||||| |||||||||| |||||||||| |
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| T |
3768025 |
atattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccat |
3767926 |
T |
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| Q |
149 |
tttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
224 |
Q |
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| T |
3767925 |
ttgcaactgatcaatttacgaacaagtcatatatttgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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