View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_25 (Length: 342)

Name: NF5676_low_25
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_25
NF5676_low_25
[»] chr2 (3 HSPs)
chr2 (18-333)||(35400897-35401211)
chr2 (113-236)||(38832785-38832908)
chr2 (41-99)||(38832870-38832926)
[»] scaffold0189 (2 HSPs)
scaffold0189 (73-207)||(10542-10678)
scaffold0189 (37-167)||(10636-10764)
[»] chr5 (2 HSPs)
chr5 (48-194)||(14695847-14695991)
chr5 (235-310)||(14696130-14696205)
[»] chr8 (1 HSPs)
chr8 (37-204)||(993940-994104)
[»] chr4 (5 HSPs)
chr4 (73-236)||(27758124-27758286)
chr4 (231-315)||(27758342-27758426)
chr4 (37-95)||(35434625-35434681)
chr4 (114-167)||(27758113-27758166)
chr4 (235-315)||(35434398-35434478)
[»] chr6 (1 HSPs)
chr6 (37-218)||(3048977-3049153)
[»] chr7 (3 HSPs)
chr7 (124-210)||(48473897-48473983)
chr7 (37-116)||(48473939-48474014)
chr7 (235-323)||(13073971-13074057)
[»] chr3 (1 HSPs)
chr3 (231-297)||(28984047-28984113)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 35401211 - 35400897
Alignment:
Q  18 caaatgatcaatgtctctaatacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35401211 caaatgatcaatgtctctaatacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctactgagacaagagatgaag 35401112  T
Q  118 aaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35401111 aaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaagtgaaaccttgatattattcaacatatttgaatt 35401012  T
Q  218 gatcccctgttacatcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttgct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35401011 gatcccctattacatcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctac-tgct 35400913  T
Q  318 cccaaattcttcatct 333  Q
    | ||||||||||||||    
T  35400912 cacaaattcttcatct 35400897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 38832908 - 38832785
Alignment:
Q  113 tgaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatattt 212  Q
    |||||||||  ||||||||||||||||||| |  ||||| ||| |||   || ||||||||   ||||||| |||||||| | | |||||||||||||||    
T  38832908 tgaagaaaagtgcactcttcgagtgagtgtcaaatcctatagaaaaacgtgaagagaaattggagaagaaagtgaaacctagttcttattcaacatattt 38832809  T
Q  213 gaattgatcccctgttacatcata 236  Q
     ||||||| |  ||||||||||||    
T  38832808 aaattgattcaatgttacatcata 38832785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 38832926 - 38832870
Alignment:
Q  41 actctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactccta 99  Q
    |||||| |||||||| |||||||||||| ||||  |||||||||||||||||| |||||    
T  38832926 actctaattatcttatagtgaagaaaagtgcac--tcttcgagtgagtgtcaaatccta 38832870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 10678 - 10542
Alignment:
Q  73 cactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagtgagtgtaatctccta-gagagaaaatagatgagaaa 171  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  10678 cactcttcgagtgagtgtaaactcctagagagaaaagagatgaagaaaatggcactcttcgagtaagtgtaaactcctaggagagaaaatagatgagaaa 10579  T
Q  172 ttatggaagaaaatg-aaaccttgatattattcaaca 207  Q
    ||| || ||||| || |||||||| ||||||||||||    
T  10578 ttaggggagaaagtgaaaaccttgttattattcaaca 10542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 10764 - 10636
Alignment:
Q  37 atacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagt 136  Q
    |||||||||| |||| | |||||||||||||||||||  ||||||||||||||| ||||| |  ||||| ||||||||||||||||||||||||||||||    
T  10764 atacactctaattatatcagagtgaagaaaagggcac--tcttcgagtgagtgttaactcatggagagaaaagagatgaagaaaatggcactcttcgagt 10667  T
Q  137 gagtgtaatctcctagagagaaaatagatga 167  Q
    |||||||| ||||||||||||||| ||||||    
T  10666 gagtgtaaactcctagagagaaaagagatga 10636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 194
Target Start/End: Original strand, 14695847 - 14695991
Alignment:
Q  48 ttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagtgagtgtaatct 147  Q
    |||| ||||||||||||||| |||||  ||||||||||||||  |||||||| ||||| || ||||||||||||||||||||||  ||||||||||| ||    
T  14695847 ttattttagagtgaagaaaaaggcac--tcttcgagtgagtgctaactcctagagagaaaatagatgaagaaaatggcactctttaagtgagtgtaaact 14695944  T
Q  148 cctagagagaaaatagatgagaaattatggaagaaaatgaaaccttg 194  Q
    |||| |||| ||||||||||||||||| |||||||| ||||||||||    
T  14695945 cctatagaggaaatagatgagaaattagggaagaaagtgaaaccttg 14695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 14696130 - 14696205
Alignment:
Q  235 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactct 310  Q
    |||||||||||||| |||||||   ||| |||||||||| ||| |||| ||||  ||||||||||||| |||||||    
T  14696130 taaatttaggaaagaaaataaaccaaactataaaattaggaaagggaattaactaaatgtaatcaagtgtaactct 14696205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 994104 - 993940
Alignment:
Q  37 atacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagt 136  Q
    |||||| ||| |||||||||||||||||||| |   ||||||| |||||||||| |||||||  |||||  ||||||||| ||||||||||||||||| |    
T  994104 atacaccctaattatcttagagtgaagaaaaag---cactctttgagtgagtgttaactccttgagagaacagagatgaaaaaaatggcactcttcgaat 994008  T
Q  137 gagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattca 204  Q
    | |||||| ||||||||||||||  ||||||||||||| |||||||| |||||| ||| |||||||||    
T  994007 gcgtgtaaactcctagagagaaatcagatgagaaattaaggaagaaagtgaaacattgttattattca 993940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 27758124 - 27758286
Alignment:
Q  73 cactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaat 172  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||| |  |||| ||||||||| ||||| ||  |||||||||||||||||| ||||    
T  27758124 cactcttcgagtgagtgtcgactcctagagagaaaagagatgaagaaa-taacacttttcgagtgaatgtaaacttttagagagaaaatagatgacaaat 27758222  T
Q  173 tatggaagaaaatgaaaccttgatattattcaacatatttgaattgatcccctgttacatcata 236  Q
    || |||||||| |||||||||  ||||||||||||||| ||||||| | | || ||||||||||    
T  27758223 taaggaagaaagtgaaaccttattattattcaacatatctgaattggttcactattacatcata 27758286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 27758342 - 27758426
Alignment:
Q  231 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttg 315  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||  |||||||||||||  |||||||||||    
T  27758342 atcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaactctacttg 27758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 35434681 - 35434625
Alignment:
Q  37 atacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaact 95  Q
    |||| ||||| ||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  35434681 atactctctaattatcttagagtgaagaaacggg--cactcttcgagggagtgtcaact 35434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 27758113 - 27758166
Alignment:
Q  114 gaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatga 167  Q
    ||||||||  |||||||||||||||||||   ||||||||||||||| ||||||    
T  27758113 gaagaaaacagcactcttcgagtgagtgtcgactcctagagagaaaagagatga 27758166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 35434478 - 35434398
Alignment:
Q  235 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttg 315  Q
    |||||| | ||||| |||||||||||||| ||||||||||||  | || ||||  || ||||||||||  |||||||||||    
T  35434478 taaattcaagaaagaaaataaattgaaccgtaaaattagaaatggaaaataacttaacgtaatcaagtgcaactctacttg 35434398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 3048977 - 3049153
Alignment:
Q  37 atacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaagaaaatggcactcttcgagt 136  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||||| ||| | ||||||||||| ||| |||||  ||   ||    
T  3048977 atacactctaattatcttagagtgaagaaaatggcac--tcttcgagtgagtgtcaactcctaaagaaataagagatgaag-aaagggcacgttttacgt 3049073  T
Q  137 gagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatatttgaattg 218  Q
    ||||| ||  | ||||||||||||||||||||||||||  |||||||   ||||| || ||||||||||||||  |||||||    
T  3049074 gagtggaa-attctagagagaaaatagatgagaaattagtgaagaaaccaaaacc-tgttattattcaacataactgaattg 3049153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 48473983 - 48473897
Alignment:
Q  124 gcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaaatgaaaccttgatattattcaacatat 210  Q
    |||||||||||||||||||   ||||||||||||||| |||||| |||||  |||||||| |||| ||||| ||||||| |||||||    
T  48473983 gcactcttcgagtgagtgtcgactcctagagagaaaagagatgaaaaattggggaagaaagtgaacccttgttattatttaacatat 48473897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 48474014 - 48473939
Alignment:
Q  37 atacactctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactcctacagagacaagagatgaa 116  Q
    |||||||||| |||||| ||||||||||||||    ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  48474014 atacactctaattatctaagagtgaagaaaag----cactcttcgagtgagtgtcgactcctagagagaaaagagatgaa 48473939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 13073971 - 13074057
Alignment:
Q  235 taaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaatcaagtataactctacttgctcccaaa 323  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||   |||||| |||||||||||   ||||||||||||| ||||    
T  13073971 taaatttaggaaaggaaataaacataaccataaaattag-aaaaggagaaaaccgattgtaatcaagt-gcactctacttgctcacaaa 13074057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 28984047 - 28984113
Alignment:
Q  231 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaat 297  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| ||| |||| |||| |||||||||    
T  28984047 atcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat 28984113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University