View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_27 (Length: 328)
Name: NF5676_low_27
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 23695022 - 23695330
Alignment:
| Q |
1 |
agtaaaaatataacaagggatgctcagaaaaattaaacaataatataacaatagtatgaagtcctaattaagttgtagtggggtagcctttgagcttacc |
100 |
Q |
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| T |
23695022 |
agtaaaaatataacaagggatgctctaaaaaattaaacaat--tataacaatagtaagaagtcctaattaagttgtagtgaggtagcaattgagcttacc |
23695119 |
T |
|
| Q |
101 |
ataagataaacaatgcttgatgcaaccacagtggagtaacgacccaaatatgcatcagctatgaatccaccaaagagtggcatcagagttgtaacacctg |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23695120 |
ataagataaacaatgcttgatgcaaccacagcggagtaacgacccaaatatgcatcagctatgaatccaccaaagagtggcatcagagttgtgacacctg |
23695219 |
T |
|
| Q |
201 |
cccagtaattaacattccttgctgctgtcttaagatcttgatggataacctttgtgaggtaaaggactaagctagttgctattccaaagtagctcaacct |
300 |
Q |
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|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23695220 |
cccaataattaacattccttgctgctgtcttaagatcttgatggataacctttgtgaggtaaaggactaagctagttgctattccaaagtagctcaacct |
23695319 |
T |
|
| Q |
301 |
ctcactaaact |
311 |
Q |
| |
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||||||||||| |
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| T |
23695320 |
ctcactaaact |
23695330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 90 - 311
Target Start/End: Original strand, 6147738 - 6147959
Alignment:
| Q |
90 |
ttgagcttaccataagataaacaatgcttgatgcaaccacagtggagtaacgacccaaatatgcatcagctatgaatccaccaaagagtggcatcagagt |
189 |
Q |
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||||| ||||||| ||||||| |||| ||| |||| |||||||| |||||| ||||| |||| |||||||| |||||| ||||| |||||||||| ||| |
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| T |
6147738 |
ttgagattaccatgagataaatgatgcatgaagcaatcacagtggtgtaacggcccaagtatgaatcagctaagaatcctccaaaaagtggcatcaaagt |
6147837 |
T |
|
| Q |
190 |
tgtaacacctgcccagtaattaacattccttgctgctgtcttaagatcttgatggataacctttgtgaggtaaaggactaagctagttgctattccaaag |
289 |
Q |
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|| || || | ||| || ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6147838 |
ggtgactccagaccaatagttaacattcctaactgctgtcttaaggtcttgatgcataacctttgtgaggtaaatcaccaagctagttgctattccaaag |
6147937 |
T |
|
| Q |
290 |
tagctcaacctctcactaaact |
311 |
Q |
| |
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||||| | ||| |||||||||| |
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| T |
6147938 |
tagctaagcctttcactaaact |
6147959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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