View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_29 (Length: 313)

Name: NF5676_low_29
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_29
NF5676_low_29
[»] chr1 (1 HSPs)
chr1 (1-295)||(8099018-8099313)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8099313 - 8099018
Alignment:
Q  1 aatgcttaagttcttttnnnnnnnntatgagaaatgggaaataagttcttttttaattatgatcaatatttatacatacattataaattcctttatacat 100  Q
    |||||||||||||||||        ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||     
T  8099313 aatgcttaagttcttttaaaaaaaatatgagaaatgagaaataagttcttttttaattatgatcaatatt-atacatacattataaattcctttttacaa 8099215  T
Q  101 tagtcaacgaaaagattcttgtacgcataacctattaacctttacatatatatgaagctagtcactctcacttgcatgtgggtacattattaatacatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8099214 tagtcaacgaaaagattcttgtacgcataacctattaacctttacatatatatgaagctagtcactctcacttgcatgtgggtacattattaatacattt 8099115  T
Q  201 ataatagcaatagtttcccatcataagc--gttttgagaaaaagtatttttaccattcttggctagttaaattgatactctgataaatatttaattt 295  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||    
T  8099114 ataatagcaatagtttcccatcataagcgtgttttgagaaaaagtatttttaccattcttggctagttaaattgatgctgtaataaatatttgattt 8099018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University