View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_33 (Length: 281)
Name: NF5676_low_33
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 50276896 - 50277168
Alignment:
| Q |
1 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtatt---ataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276896 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtattattataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
50276995 |
T |
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| Q |
98 |
atgtcctaaggcataacaatttttcagaagatttcttatttaagtattacagtactactaataaatgtttataagtttgtaaggacttattaagttaacc |
197 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276996 |
atgtcctaaggcataacaatttttcagaaggtttcttatttaagtattacagtactgctaataaatgtttataagtttgtaaggacttattaagttaacc |
50277095 |
T |
|
| Q |
198 |
c-nnnnnnnnnnnnnncgcggatactcgactaaacacatcaaagcagaaattagtttaaatacaacacacaca |
269 |
Q |
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| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50277096 |
caaaaaaataaaaaaacgtggatactcgactaaacacatcaaagcagaaatttgtttaaatacaacacacaca |
50277168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 50280920 - 50281192
Alignment:
| Q |
1 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtatt---ataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50280920 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtattattataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
50281019 |
T |
|
| Q |
98 |
atgtcctaaggcataacaatttttcagaagatttcttatttaagtattacagtactactaataaatgtttataagtttgtaaggacttattaagttaacc |
197 |
Q |
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| T |
50281020 |
atgtcctaaggcataacaatttttcagaaggtttcttatttaagtattacagtactgctaataaatgtttataagtttgtaaggacttattaagttaacc |
50281119 |
T |
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| Q |
198 |
c-nnnnnnnnnnnnnncgcggatactcgactaaacacatcaaagcagaaattagtttaaatacaacacacaca |
269 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50281120 |
caaaaaaataaaaaaacgtggatactcgactaaacacatcaaagcagaaatttgtttaaatacaacacacaca |
50281192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 50288564 - 50288836
Alignment:
| Q |
1 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtatt---ataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288564 |
tcccaaaagtcaaattagatgatcatttatgaaaaatgaaagtattattataagaatcttacattaacttttgcatcttaataagttatcaaaaactctt |
50288663 |
T |
|
| Q |
98 |
atgtcctaaggcataacaatttttcagaagatttcttatttaagtattacagtactactaataaatgtttataagtttgtaaggacttattaagttaacc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288664 |
atgtcctaaggcataacaatttttcagaaggtttcttatttaagtattacagtactgctaataaatgtttataagtttgtaaggacttattaagttaacc |
50288763 |
T |
|
| Q |
198 |
c-nnnnnnnnnnnnnncgcggatactcgactaaacacatcaaagcagaaattagtttaaatacaacacacaca |
269 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50288764 |
caaaaaaataaaaaaacgtggatactcgactaaacacatcaaagcagaaatttgtttaaatacaacacacaca |
50288836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 14461745 - 14461692
Alignment:
| Q |
216 |
ggatactcgactaaacacatcaaagcagaaattagtttaaatacaacacacaca |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14461745 |
ggatactcgactaaacacatcaaagcagaaattagtttaaatacaacacacaca |
14461692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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