View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_34 (Length: 275)
Name: NF5676_low_34
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_34 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 110 - 275
Target Start/End: Original strand, 52709125 - 52709290
Alignment:
| Q |
110 |
aattaaaaatttcaaagaatacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaatatttgagcatcaaaacttgctgannnnnnnna |
209 |
Q |
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| T |
52709125 |
aattaaaaatttcaaagaatacacatgagtttatttaaaattagagatcaaaagtcgtgacggaaaatatttgagtatcaatacttgctgatttttttta |
52709224 |
T |
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| Q |
210 |
ggggaattagaaacagaatttaagaatttgataggaaccaaaaatatttaaactaaaaataatata |
275 |
Q |
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| T |
52709225 |
ggggaattagaaacagaatttaagaatttgataggaaccaaaaatatttaaactaaaaataatata |
52709290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 270
Target Start/End: Complemental strand, 26398993 - 26398830
Alignment:
| Q |
110 |
aattaaaaatttcaaagaatacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaatatttgagcatcaaaacttgctgannnnnnnna |
209 |
Q |
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| T |
26398993 |
aattaaaaaatttaaaggatacacatgagtttatttaaaatcagagatcaaaagtcgtgacggaaaatatttgagtatcaaaacttgctgaatttttgta |
26398894 |
T |
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| Q |
210 |
ggggaattagaaacagaa-tttaagaatttgataggaaccaaaaa--tatttaaactaaaaata |
270 |
Q |
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| T |
26398893 |
ggggaattagaaacaaaattttaagaatttaatagaaaccaaaaatttatttaaactaaaaata |
26398830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52709016 - 52709058
Alignment:
| Q |
1 |
ttctaaacactaaaagtttaaaatatttaattcatcccttgat |
43 |
Q |
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| T |
52709016 |
ttctaaacactaaaagtttaaaatatttaattcatcccttgat |
52709058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26399100 - 26399058
Alignment:
| Q |
1 |
ttctaaacactaaaagtttaaaatatttaattcatcccttgat |
43 |
Q |
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| T |
26399100 |
ttctaaacactaaaagtttaaattatttaattcatcccttgat |
26399058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 28677240 - 28677171
Alignment:
| Q |
128 |
atacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaatatttgagcatcaaaacttgc |
197 |
Q |
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| T |
28677240 |
atacacataagttgatttgataatatagattaaaagttgtgacgaaaaatatttgaagatcaaaacttgc |
28677171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 41134979 - 41135028
Alignment:
| Q |
128 |
atacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaat |
177 |
Q |
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| T |
41134979 |
atacacatgattttatttaaatgtagagatcaaaagttgtgacggaaaat |
41135028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 13155742 - 13155806
Alignment:
| Q |
128 |
atacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaatatttgagcatcaaaa |
192 |
Q |
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| T |
13155742 |
atacacatgagtttatttaaaagcagagatcaaaaatcatgaaagaaaatatttgaggatcaaaa |
13155806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 23588318 - 23588260
Alignment:
| Q |
122 |
caaagaatacacatgagtttatttaaaattagagatcaaaagttgtgacggaaaatatt |
180 |
Q |
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| T |
23588318 |
caaagaatacacataagttgatataaaaacagcgagcaaaagttgtgacggaaaatatt |
23588260 |
T |
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