View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_35 (Length: 256)
Name: NF5676_low_35
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 7133724 - 7133494
Alignment:
| Q |
10 |
attattcttcaatgcactatagtacacaaatacaatacataataaactgtgtacaataccagggtcatcaatagaaatcacatttagaaatacaagttca |
109 |
Q |
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| T |
7133724 |
attattcttcaaagcactatagtacacaaatacaatacataataaactgtgtacaataccagggtcatcaatagaaatcacatttagaaatacaagttca |
7133625 |
T |
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| Q |
110 |
tccgacacctatccttgatcaaacacaacatacaattcacccattcttgctcaagcacaacaagaatgcatctcaattctcaacccaccttgatcatgtg |
209 |
Q |
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| T |
7133624 |
tcctacacttatccttgatcaaacacaacatacaattcacccattcttgctcaagcacaacaagaatgcatctcaattctcaacccaccttgatcatgtg |
7133525 |
T |
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| Q |
210 |
aaaacatcttctgtcaaaggcagcagtaaat |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7133524 |
aaaacatcttctgtcaaaggcagcagtaaat |
7133494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 7128222 - 7128169
Alignment:
| Q |
187 |
tctcaacccaccttgatcatgtgaaaacatcttctgtcaaaggcagcagtaaat |
240 |
Q |
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||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |
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| T |
7128222 |
tctcaacccaccttgatgaagtgaaaacatcttctttcaaaggcagcaataaat |
7128169 |
T |
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