View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676_low_36 (Length: 256)
Name: NF5676_low_36
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 48205563 - 48205801
Alignment:
| Q |
1 |
aaacaggctcacttaacaagttaggatatcttaatctatcaaattctgatttgattccaggcttcagtgtcaaattgaaaatcttttagaactagactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48205563 |
aaacaggctcacttaacaagttaggatatcttaatctatcaaattctgatttgattccaggcttcagtgtcaaattgaaaatcttttagaactagactat |
48205662 |
T |
|
| Q |
101 |
ttagttctaagtnnnnnnnttgatagtctgattggaaatattttgtttttcaacataggaaactaacacatttatgatatatgaatctagacacatttca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48205663 |
ttagttctaagtaaaaaaattgatagtctgattggaaatattttgtttttcaacataggaaactaacacatttatgatatatgaatctagacacatttca |
48205762 |
T |
|
| Q |
201 |
acttcgaaatttcagagtttcagtattttgatcttaaaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48205763 |
acttcgaaatttcagagtttcagtattttgatcttaaaa |
48205801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University