View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5676_low_39 (Length: 251)
Name: NF5676_low_39
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_39 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42730587 - 42730826
Alignment:
| Q |
1 |
ttgatgggaaaagtaggagctgaatctgttgttgaagctgtaaattgtgctgttaatggaagatcttttgaggttgtgtattatccaagagctagtactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42730587 |
ttgatgggaaaagtaggagctgaatctgttgttgaagctgtaaattgtgctgttaatggaagatcttttgaggttgtgtattatccaagagctagtactc |
42730686 |
T |
|
| Q |
101 |
ctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42730687 |
ctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttc |
42730786 |
T |
|
| Q |
201 |
taggattagttggtttatgggaactatttcttctgttcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42730787 |
taggattagttggtttatgggaactatttcttctgttcat |
42730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 28347329 - 28347416
Alignment:
| Q |
136 |
gcaatgcaaattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaa |
223 |
Q |
| |
|
|||||||| |||| |||||||||||| || |||||||| ||| | |||||||| |||||||| ||| | || |||||||||||||||| |
|
|
| T |
28347329 |
gcaatgcagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 40352254 - 40352082
Alignment:
| Q |
67 |
tttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatga |
166 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||| |||||| ||||| ||| | |||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
40352254 |
tttgaggtagtttattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatga |
40352155 |
T |
|
| Q |
167 |
gattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
239 |
Q |
| |
|
| || || ||||| || ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40352154 |
ggtttaagatgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttca |
40352082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 21716183 - 21716355
Alignment:
| Q |
67 |
tttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatga |
166 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| || |||||||||| ||| | || || |||| ||| ||||||||||||||||| |||| |
|
|
| T |
21716183 |
tttgaagttgtttactatccaagagctagcactcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatga |
21716282 |
T |
|
| Q |
167 |
gattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
239 |
Q |
| |
|
| ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
21716283 |
ggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttca |
21716355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 51742176 - 51742244
Alignment:
| Q |
144 |
aattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtt |
215 |
Q |
| |
|
||||||||||||||||||| |||| || || ||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
51742176 |
aattcaatggtgttctggtgtgagttt-aagatgccatt--aaactgaggattcttctagtattagttggtt |
51742244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 96356 - 96441
Alignment:
| Q |
151 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgt |
236 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| ||||||| ||||| || || ||||| ||||||||||| |||||| || ||||||| |
|
|
| T |
96356 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgt |
96441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 88348 - 88436
Alignment:
| Q |
151 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
239 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
|
|
| T |
88348 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
88436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 40869926 - 40869841
Alignment:
| Q |
151 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgt |
236 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| ||||||| ||||| || || ||||| ||||||||||| |||||| || ||||||| |
|
|
| T |
40869926 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgt |
40869841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 40877935 - 40877847
Alignment:
| Q |
151 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
239 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
|
|
| T |
40877935 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
40877847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University