View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_4 (Length: 535)
Name: NF5676_low_4
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 42 - 511
Target Start/End: Complemental strand, 39626045 - 39625576
Alignment:
| Q |
42 |
ccattagataggatgggctaaatgatcaagagatgtcataaaaaatctgggtataaggtcattattcagactttcatttgtaaattataatatcatgtgc |
141 |
Q |
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| T |
39626045 |
ccattagataggatgggctaaatgatcaagagatgtcataaaaaatctgggtataaggtcattattcagactttcatttgtaaattataatatcatgtgc |
39625946 |
T |
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| Q |
142 |
tacattcctgtctctcttttacccttcacatctaaatgctaaattttcaaacttcaaacactagcacgtttttagccaaaattgataagagttttaacca |
241 |
Q |
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| T |
39625945 |
tacattcctgtctctcttttaccctttacatctaaatgctaaattttcaaacttcaaacactagcacgtttttagccaaaattgataagagttttaacca |
39625846 |
T |
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| Q |
242 |
agaagggagacatttgttaaaaccgttccacattaaattcttattctaaaagaatgttcgattatttaacaattgatattaatttctggtttcacacttt |
341 |
Q |
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| T |
39625845 |
agaagggagacatttgttaaaaccgttccacattaaattcttattctaaaagaatgttcaattatttaacaattgatattaatttctggtttcacacttt |
39625746 |
T |
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| Q |
342 |
tttgtgttcaaacaa-nnnnnnnnnaaaataacaaggtggaagactccaaccaccctagaacttgttattaagtaaatatataacatttatctatgaagt |
440 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39625745 |
tttgtgttcaaacaattttttttttaaaataacaaggtggaagactccaaccaccctagaacttgttattaagtaaat-tataacatttatctatgaagt |
39625647 |
T |
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| Q |
441 |
cagtatcatgagttcactttacaacctaaacccaaatcgccacccactccaactatttgagtcaagtggca |
511 |
Q |
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| T |
39625646 |
cagtatcatgagttcactctacaacctaaacccaaatcgccacccactccaactatttgagtcaagtggca |
39625576 |
T |
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