View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_42 (Length: 245)

Name: NF5676_low_42
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_42
NF5676_low_42
[»] chr7 (1 HSPs)
chr7 (18-67)||(26150763-26150812)
[»] chr4 (3 HSPs)
chr4 (18-74)||(12150731-12150787)
chr4 (18-74)||(50389973-50390029)
chr4 (16-67)||(37422558-37422609)
[»] chr1 (2 HSPs)
chr1 (13-74)||(13203852-13203913)
chr1 (26-74)||(14341642-14341690)
[»] chr3 (1 HSPs)
chr3 (27-71)||(53786751-53786795)


Alignment Details
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26150763 - 26150812
Alignment:
Q  18 aaaaaattgggtaataatctggtgtgactatagccacactcagccatacg 67  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  26150763 aaaaaattgggtaataatctggtgtggctatagccatactcagccatacg 26150812  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 12150787 - 12150731
Alignment:
Q  18 aaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc 74  Q
    ||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12150787 aaaaagttaggtgataatctggtgtgactatagccacactcaaccatacggtgggtc 12150731  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 50390029 - 50389973
Alignment:
Q  18 aaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc 74  Q
    |||||| || ||||||||| |||| | ||||||||||||||||||||||||||||||    
T  50390029 aaaaaaatgagtaataatcaggtgcggctatagccacactcagccatacggtgggtc 50389973  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 37422609 - 37422558
Alignment:
Q  16 agaaaaaattgggtaataatctggtgtgactatagccacactcagccatacg 67  Q
    |||||||||||| ||||||||||||||  ||||||||||| | |||||||||    
T  37422609 agaaaaaattggctaataatctggtgtatctatagccacatttagccatacg 37422558  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 13203852 - 13203913
Alignment:
Q  13 aagagaaaaaattgggtaataatctggtgtgactatagccacactcagccatacggtgggtc 74  Q
    |||| |||||||||| ||||||||||||||| | ||| |||||||||| ||||| |||||||    
T  13203852 aagataaaaaattggataataatctggtgtggcgataaccacactcagtcatacagtgggtc 13203913  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 14341690 - 14341642
Alignment:
Q  26 gggtaataatctggtgtgactatagccacactcagccatacggtgggtc 74  Q
    |||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  14341690 gggtaatattctggcgtggctatagccacaatcagccatacggtgggtc 14341642  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 53786751 - 53786795
Alignment:
Q  27 ggtaataatctggtgtgactatagccacactcagccatacggtgg 71  Q
    |||||||||||||||||  | |||||||||||| |||||||||||    
T  53786751 ggtaataatctggtgtggttgtagccacactcatccatacggtgg 53786795  T

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