View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_45 (Length: 240)
Name: NF5676_low_45
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_45 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 20022955 - 20023189
Alignment:
| Q |
6 |
aagcataggcaaaagggggatgtagtggtcgtctcacaatgacataagcacaaggggcgatcgcggtagttagaatgccaccggaagcgacgagaggggg |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
20022955 |
aagcatcggcaaaagggggatgtagtggtcgtctcacaatgacataagcgcaaggggcgatcgcggtagttagaatgccaccggcagcaacgagaggggg |
20023054 |
T |
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| Q |
106 |
ctcatttcttctttttggttatggtaatttattccttttattatatttgtctcattgtttggtcctcattttcttcannnnnnnncaaggaccgatatgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
20023055 |
ctcatttcttctttttggttatggtaatttattccttttattctatttgtctcattgtttggtcctcattttcttcattttttttcaaggaccgacatgt |
20023154 |
T |
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| Q |
206 |
gatggagtagccgcataggcaatgaaggtattctt |
240 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
20023155 |
gatggagtagccgcatagaaaatgaaggtattctt |
20023189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 23159460 - 23159697
Alignment:
| Q |
6 |
aagcataggcaaaagggggatgtagtggtcgtctcacaatgacataagcacaaggggcgatcgcggtagttagaatgccaccggaagcgacgagaggggg |
105 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||||||| ||||| |||||||| | | | ||||||||| ||||||||| ||| ||||||||| | |
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| T |
23159460 |
aagcatcggcaaaaggggaatgaagtggtcgtctcacaatgacgtaagcgcaaggggcaaccaccgtagttagagtgccaccggcagcaacgagagggcg |
23159559 |
T |
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| Q |
106 |
ctcat---ttcttctttttggttatggtaatttattccttttattatatttgtctcattgtttggtcctcattttcttcannnnnnnncaaggaccgata |
202 |
Q |
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| T |
23159560 |
ctcatttcttcttcttttttgttatgttcatttattccttttattatatttgtctcatagtttggtcctcattttcttcatttttttccaaggaccggca |
23159659 |
T |
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| Q |
203 |
tgtgatggagtagccgcataggcaatgaaggtattctt |
240 |
Q |
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| T |
23159660 |
tgtgatggagtagccgcataggcaatgaaggtattctt |
23159697 |
T |
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