View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_51 (Length: 235)

Name: NF5676_low_51
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_51
NF5676_low_51
[»] chr3 (3 HSPs)
chr3 (14-227)||(9460063-9460276)
chr3 (14-227)||(9471304-9471517)
chr3 (14-227)||(16486049-16486263)
[»] chr1 (2 HSPs)
chr1 (14-227)||(5723471-5723684)
chr1 (14-227)||(44600498-44600711)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 9460063 - 9460276
Alignment:
Q  14 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9460063 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 9460162  T
Q  114 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9460163 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 9460262  T
Q  214 ttttgatgatgatg 227  Q
    ||||||||||||||    
T  9460263 ttttgatgatgatg 9460276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 9471304 - 9471517
Alignment:
Q  14 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471304 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 9471403  T
Q  114 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471404 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 9471503  T
Q  214 ttttgatgatgatg 227  Q
    ||||||||||||||    
T  9471504 ttttgatgatgatg 9471517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 16486049 - 16486263
Alignment:
Q  14 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16486049 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 16486148  T
Q  114 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaag-ttc 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  16486149 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagtttc 16486248  T
Q  213 tttttgatgatgatg 227  Q
    |||||||||||||||    
T  16486249 tttttgatgatgatg 16486263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 5723471 - 5723684
Alignment:
Q  14 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5723471 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 5723570  T
Q  114 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5723571 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagttct 5723670  T
Q  214 ttttgatgatgatg 227  Q
    |||| |||||||||    
T  5723671 tttttatgatgatg 5723684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 44600498 - 44600711
Alignment:
Q  14 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44600498 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 44600597  T
Q  114 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44600598 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagttct 44600697  T
Q  214 ttttgatgatgatg 227  Q
    ||||||||||||||    
T  44600698 ttttgatgatgatg 44600711  T

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