View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5676_low_53 (Length: 228)

Name: NF5676_low_53
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5676_low_53
NF5676_low_53
[»] chr2 (5 HSPs)
chr2 (58-228)||(1234883-1235054)
chr2 (126-163)||(8424689-8424726)
chr2 (4-37)||(19491984-19492017)
chr2 (126-170)||(9808249-9808293)
chr2 (4-52)||(25539174-25539222)
[»] chr4 (10 HSPs)
chr4 (58-228)||(6663672-6663843)
chr4 (58-228)||(19887942-19888112)
chr4 (58-224)||(6660097-6660264)
chr4 (58-171)||(31890166-31890276)
chr4 (7-52)||(6347012-6347057)
chr4 (126-170)||(43288064-43288108)
chr4 (127-168)||(31767317-31767358)
chr4 (4-52)||(4156906-4156954)
chr4 (7-55)||(8011162-8011209)
chr4 (4-52)||(18459645-18459693)
[»] chr5 (5 HSPs)
chr5 (60-228)||(25634768-25634937)
chr5 (58-228)||(25641302-25641475)
chr5 (57-214)||(34350937-34351092)
chr5 (1-46)||(26021405-26021450)
chr5 (4-52)||(43005890-43005938)
[»] chr1 (3 HSPs)
chr1 (62-228)||(29401691-29401854)
chr1 (1-36)||(18337485-18337520)
chr1 (126-170)||(43254327-43254371)
[»] chr7 (3 HSPs)
chr7 (58-219)||(38415182-38415344)
chr7 (4-52)||(30294306-30294354)
chr7 (126-170)||(32352290-32352334)
[»] chr3 (5 HSPs)
chr3 (124-168)||(9372059-9372103)
chr3 (126-168)||(14655081-14655123)
chr3 (1-46)||(17796617-17796662)
chr3 (1-46)||(19105057-19105102)
chr3 (1-33)||(28135853-28135885)
[»] chr8 (4 HSPs)
chr8 (1-52)||(15761388-15761439)
chr8 (126-168)||(609804-609846)
chr8 (1-35)||(1018227-1018261)
chr8 (88-170)||(13274319-13274401)
[»] scaffold0048 (1 HSPs)
scaffold0048 (4-52)||(48726-48774)
[»] chr6 (1 HSPs)
chr6 (89-168)||(2935965-2936045)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 1235054 - 1234883
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatta-gtattaaagagaataaacaagagagatatcaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1235054 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaa 1234955  T
Q  157 gtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  1234954 gtaaacttatctgtgctatatattagtctatgacttggccatcgatacaggtccatcgttatcttccactga 1234883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 8424726 - 8424689
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaact 163  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  8424726 tattgaagagaataaacaagagggatatcaagtaaact 8424689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 19491984 - 19492017
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaa 37  Q
    |||||||||||| |||||||||||||||||||||    
T  19491984 catacaaaatcgcaggattttaaagggttttgaa 19492017  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 9808293 - 9808249
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatctgt 170  Q
    |||||||||||||||||||||||||||| || ||  |||||||||    
T  9808293 tattaaagagaataaacaagagagatatgaaataggcttatctgt 9808249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25539222 - 25539174
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    |||||||||||| ||||||||||||||||||| |  ||||||| |||||    
T  25539222 catacaaaatcgcaggattttaaagggttttgtagaattttgtccattt 25539174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 6663672 - 6663843
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatta-gtattaaagagaataaacaagagagatatcaa 156  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6663672 tgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaa 6663771  T
Q  157 gtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6663772 gtaaacttatatgtgctatatattagtctatgatttggccatcgatacagttccatcattatcctccactga 6663843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 19887942 - 19888112
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatt-agtattaaagagaataaacaagagagatatcaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19887942 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaa 19888041  T
Q  157 gtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||    
T  19888042 gtaatcttat-tgtgctatatattagtctatgacttggccatcaaaacaggtccatcattatcttccactga 19888112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 6660097 - 6660264
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatta-gtattaaagagaataaacaagagagatatcaa 156  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  6660097 tgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagaaaataaataagagagatatcaa 6660196  T
Q  157 gtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttcca 224  Q
    ||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  6660197 gtaaacttatctgcgctatatattagtctatgatttggtcatcgatacagttccatcattatcctcca 6660264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 31890276 - 31890166
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattagtattaaagagaataaacaagagagatatcaag 157  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||   ||||||||||||||||||||||||||||||||||    
T  31890276 tgttgtaaaatatttacttagaattatatccaaataataatcaacatataaaaacaataatta---agtattaaagagaataaacaagagagatatcaag 31890180  T
Q  158 taaacttatctgtg 171  Q
    ||||||| ||||||    
T  31890179 taaacttttctgtg 31890166  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 6347057 - 6347012
Alignment:
Q  7 acaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||    
T  6347057 acaaaatcgcaggattttaaagggttttgaaggattttgtccattt 6347012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 43288108 - 43288064
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatctgt 170  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  43288108 tatttaagggaataaacaagagggatatcaagtaaacttatctgt 43288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 31767317 - 31767358
Alignment:
Q  127 attaaagagaataaacaagagagatatcaagtaaacttatct 168  Q
    ||||||||||||||| ||||| |||| |||||||||||||||    
T  31767317 attaaagagaataaataagagggataacaagtaaacttatct 31767358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4156906 - 4156954
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    |||||||||||| | ||||||||||| ||||||| |||||||| |||||    
T  4156906 catacaaaatcgcaagattttaaaggattttgaaggattttgtccattt 4156954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 8011209 - 8011162
Alignment:
Q  7 acaaaatcgtaggattttaaagggttttgaaagattttgttcatttctt 55  Q
    ||||||||| |||||||||||||||||||||  |||||| |||||||||    
T  8011209 acaaaatcgcaggattttaaagggttttgaagaattttg-tcatttctt 8011162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18459693 - 18459645
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    |||||||||| | ||||||||||| ||||||||| |||||||| |||||    
T  18459693 catacaaaattgcaggattttaaacggttttgaaggattttgtccattt 18459645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 25634768 - 25634937
Alignment:
Q  60 ttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatta-gtattaaagagaataaacaagagagatatcaagt 158  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25634768 ttgtaaaatatttacatagaattacatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaagt 25634867  T
Q  159 aaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25634868 aaacttatatgtgctgtatattagtctatgacttggccatcgatacagttccatcattatcctccactga 25634937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 25641302 - 25641475
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatt-agtattaaagagaataaacaagagagatatcaa 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  25641302 tgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtatcaaagagaataaacaagagaaatatcaa 25641401  T
Q  157 gtaaactta--tctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    |||||||||  | |||||  | |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  25641402 gtaaacttatttttgtgctgtgtattagtctatgacttggccatcgatgcagttccatcattatcctccactga 25641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 34351092 - 34350937
Alignment:
Q  57 ctgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatt-agtattaaagagaataaacaagagagatatca 155  Q
    ||||||||||||||| | ||| |||| | |||||||||||||||||| || ||||  |||||||||| | |||| ||||||||||| |||||||||||||    
T  34351092 ctgttgtaaaatattgatataaaattatctccaaataataatcaacacat-aaaatgagaaataattaaatattgaagagaataaa-aagagagatatca 34350995  T
Q  156 agtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatca 214  Q
    | | |||||||| |||| |||||||| | | ||||||| || |||| | ||||| ||||    
T  34350994 aat-aacttatcagtgctatatattattgtttgacttgaccgtcgacatagttctatca 34350937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26021405 - 26021450
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttgaaagattttgt 46  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  26021405 atccatacaaaatcgcaggattttaaagggttttgaaggattttgt 26021450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 43005938 - 43005890
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  43005938 catacaaaatcgcaggatttttaagggttttgaaggattttgttcattt 43005890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 29401691 - 29401854
Alignment:
Q  62 gtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataatta-gtattaaagagaataaacaagagagatatcaagtaa 160  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  29401691 gtaaaatatttacatagaattatatcccaataataatcaacatataaaaacaagaaataattaagtatcaaagagaataaacaagaaagatatcaagtaa 29401790  T
Q  161 acttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatcttccactga 228  Q
    | |||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  29401791 atttatctgtgctatatattagtctatgacttggcc----atacagttccatcattatcttccactga 29401854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18337520 - 18337485
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttga 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18337520 atccatacaaaatcgtaggattttaaagggtcttga 18337485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 43254371 - 43254327
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatctgt 170  Q
    |||| ||| ||||||||||||| |||||||| |||||||||||||    
T  43254371 tatttaagggaataaacaagagggatatcaaataaacttatctgt 43254327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 38415344 - 38415182
Alignment:
Q  58 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattag-tattaaagagaataaacaagagagatatcaa 156  Q
    ||||||||||| || ||||| |||| | ||||||||||||||||||||||||||  ||||||| |||  ||||||| ||||| |||||||||||||||||    
T  38415344 tgttgtaaaattttgacataaaattatttccaaataataatcaacatataaaaatgagaaatagttaaatattaaaaagaatcaacaagagagatatcaa 38415245  T
Q  157 gtaaacttatctgtgccatatattagtctatgacttggccatcgatacagttccatcattatc 219  Q
    ||||| |||||| | | |||||||| | |||||||| |||||| | ||| |||||||| ||||    
T  38415244 gtaaatttatctttactatatattattgtatgacttagccatccacacaattccatcaatatc 38415182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 30294306 - 30294354
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  30294306 catacaaaatcatagaattttaaagggttttgaaagattttgtccattt 30294354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 32352290 - 32352334
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatctgt 170  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||    
T  32352290 tatttaagcgaataaacaagagggatatcaagtaaacttatctgt 32352334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 9372059 - 9372103
Alignment:
Q  124 agtattaaagagaataaacaagagagatatcaagtaaacttatct 168  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  9372059 agtattaaagagaataaacaagagggataacaagtaaacttatct 9372103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 14655123 - 14655081
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatct 168  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||    
T  14655123 tattaaatagaattaacaagagagataacaagtaaacttatct 14655081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17796617 - 17796662
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttgaaagattttgt 46  Q
    ||||||||||||| | |||||||||||||||||| || ||||||||    
T  17796617 atccatacaaaattgcaggattttaaagggtttttaatgattttgt 17796662  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19105057 - 19105102
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttgaaagattttgt 46  Q
    ||||||||||||| | |||||||||||||||||| || ||||||||    
T  19105057 atccatacaaaattgcaggattttaaagggtttttaatgattttgt 19105102  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28135853 - 28135885
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttt 33  Q
    ||||||||||||||| |||||||||||||||||    
T  28135853 atccatacaaaatcgaaggattttaaagggttt 28135885  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15761439 - 15761388
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||| |||||    
T  15761439 atccatacaaagtcgaaagattttaaagggttttgaaggattttgtccattt 15761388  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 609804 - 609846
Alignment:
Q  126 tattaaagagaataaacaagagagatatcaagtaaacttatct 168  Q
    |||||||||||||||||||||| |||| ||| |||||||||||    
T  609804 tattaaagagaataaacaagagggataacaaataaacttatct 609846  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1018261 - 1018227
Alignment:
Q  1 atccatacaaaatcgtaggattttaaagggttttg 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  1018261 atccatacaaaatcgtaggattttaaaggattttg 1018227  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 13274319 - 13274401
Alignment:
Q  88 caaataataatcaacatataaaaacaagaaataattagtattaaagagaataaacaagagagatatcaagtaaacttatctgt 170  Q
    ||||||||||| |||||||||| | |||||  ||||  || ||| ||||||||  ||||||||| ||||| ||||||||||||    
T  13274319 caaataataattaacatataaatataagaatcaatttatactaatgagaataattaagagagatttcaaggaaacttatctgt 13274401  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 48774 - 48726
Alignment:
Q  4 catacaaaatcgtaggattttaaagggttttgaaagattttgttcattt 52  Q
    ||||||||| || | |||||||| |||||||||| ||||||||||||||    
T  48774 catacaaaaccgcatgattttaatgggttttgaaggattttgttcattt 48726  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 2935965 - 2936045
Alignment:
Q  89 aaataataatcaacatataaaaacaagaaataattag-tattaaagagaataaacaagagagatatcaagtaaacttatct 168  Q
    ||||||||||||| ||||||| | |||||  ||| |  |||||||||||||||||||||| |||| ||| ||| |||||||    
T  2935965 aaataataatcaatatataaataaaagaatcaataaaatattaaagagaataaacaagagggataacaattaatcttatct 2936045  T

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