View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_57 (Length: 216)
Name: NF5676_low_57
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 28925084 - 28924903
Alignment:
| Q |
19 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
118 |
Q |
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| T |
28925084 |
aggaatcaacagatcatcaaagcaagatgacatcagccaagaaattctgctccggctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
28924985 |
T |
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| Q |
119 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatc |
200 |
Q |
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| T |
28924984 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatc |
28924903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 28901456 - 28901275
Alignment:
| Q |
19 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
118 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28901456 |
aggaatcaaaagatcatcaaagcaagctgacatcaaccaagaaattctgctccggctttcttatgtgccaaaagatgtacctatcagccaaatttctgat |
28901357 |
T |
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| Q |
119 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatc |
200 |
Q |
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| T |
28901356 |
gttgacttttctgaggtattattaatttgctaacaatattttctgctgcactatcccccaattctgaaacctggttgcaatc |
28901275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 28915877 - 28915706
Alignment:
| Q |
29 |
agatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgactttt |
128 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
28915877 |
agatcatcaaaccaagacgaaatcaaccaagaaattctgctccggctttctaatgtgcccaaagatgtatctatcagccaaatttctgatgttgactttt |
28915778 |
T |
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| Q |
129 |
ctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatc |
200 |
Q |
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| T |
28915777 |
ctgaggtattattactttgctaacaatattttctgctgcaatgtcccacaattctgaaacctggtttcaatc |
28915706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 28890965 - 28890845
Alignment:
| Q |
19 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
118 |
Q |
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||||||||| |||||||||||| | || || ||| |||||||||||| ||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| |
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| T |
28890965 |
aggaatcaaaagatcatcaaagaaggaggaaatctaccaagaaattcagctccggctttcttatgtggcagaagatgtacctatcagcaaaatttctgat |
28890866 |
T |
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| Q |
119 |
gttgacttttctgaggtatta |
139 |
Q |
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| T |
28890865 |
gatgacttttctgaggtatta |
28890845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 28933993 - 28933901
Alignment:
| Q |
52 |
caaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgacttttctgaggtattattact |
144 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| |||| |
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| T |
28933993 |
caaccaagaaattctgctccagctctctaatgtgccaaaagatgtacctatcagcaaaatatctgacgatgacttttctgaggtattaatact |
28933901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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