View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_6 (Length: 517)
Name: NF5676_low_6
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 12955831 - 12956328
Alignment:
| Q |
1 |
aaccgtaaaaccaacccatattcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaatctattgtacttataaa |
100 |
Q |
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| T |
12955831 |
aaccgtaaaaccaacccatattcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaaactattgtacttataaa |
12955930 |
T |
|
| Q |
101 |
cctctcatttcacttgagcctcatcacacaaaattaaaccacaagaaacctcaaaatctaattaaccacaaaattctcaataagtctccaaaacatggtt |
200 |
Q |
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| T |
12955931 |
cctctcatttcacttgtgcctcatcacacaaaattaaaccacaagaaacctcaaaatctaattaaccac-aaattctcaataagtctccaaaacatggtt |
12956029 |
T |
|
| Q |
201 |
tctttttcatcatcttgtttgtctctttctttttcaacattcacaatgaaacttctcannnnnnnnnnnnnnnnngtaccatattgtgctcttgcctttg |
300 |
Q |
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| T |
12956030 |
tctttttcatcatcttgtttgtctctttctttttcaacattcacaatgaaacttctcatttttattttgttttttgtaccatattgtgctcttgcctttg |
12956129 |
T |
|
| Q |
301 |
atgtaaaaacggtcatagactctcctatgttaacacaaaaggtaggaactaatcgcactattaaagttgatatcaatggaaatggagaatttaaatcagt |
400 |
Q |
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| T |
12956130 |
atgtaaaaacggtcatagactctcctatgttaacacaaaagataggaactaatcgcactattaaagttgatatcaatggaaatggagaatttaaatcagt |
12956229 |
T |
|
| Q |
401 |
acaagctgccatagattcaattcctgaaggaaattctaattggatcatcgtccatattagaaaaggagtatataggtacaaatttaattattattacat |
499 |
Q |
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| T |
12956230 |
acaagctgccatagattcaattcctgaaggaaattctaattgggtcatcgtccatattagaaaaggagtatataggtacaaatttaattattattacat |
12956328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 130 - 470
Target Start/End: Complemental strand, 14242522 - 14242191
Alignment:
| Q |
130 |
aaaattaaaccacaagaaacctcaaaatctaattaaccacaaaattctcaataagtctccaaaacatggtttctttttcatcatcttgtttgtctctttc |
229 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| |||||| |||| ||||||||||||| |||||||| |
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| T |
14242522 |
aaaattaaactacaagaaacctcaaaatctaattaaccacaaa-ttcttaat-----tccaacacatggcctctt---catcatcttgtttttctctttc |
14242432 |
T |
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| Q |
230 |
tttttcaacattcacaatgaaacttctcannnnnnnnnnnnnnnnngtaccatattgtgctcttgcctttgatgtaaaaacggtcatagactctcctatg |
329 |
Q |
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| T |
14242431 |
tttttcaacattcacaatgaaagttctcatttttatcttggtttttgtaccatattgtgctcttgcctttgatgtaaaaacagtcatagactctcctatg |
14242332 |
T |
|
| Q |
330 |
ttaacacaaaaggtaggaactaatcgcactattaaagttgatatcaatggaaatggagaatttaaatcagtacaagctgccatagattcaattcctgaag |
429 |
Q |
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| T |
14242331 |
ttagcgcaaaaggtaggaactaatcgcactattaaagttgatattaatggaaatggagactttacatcagtacaagctgccatagattcaattcctaaag |
14242232 |
T |
|
| Q |
430 |
gaaattctaattggatcatcgtccatattagaaaaggagta |
470 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||| |
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| T |
14242231 |
gaaattctaattgggtcatcgttcatattagaaaaggagta |
14242191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 14242836 - 14242698
Alignment:
| Q |
3 |
ccgtaaaaccaacccatat--tcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaatct-attgtacttataa |
99 |
Q |
| |
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||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| | |||||| |
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| T |
14242836 |
ccgtaaaaccaacccatatcatcctttagttcattaacgctcaattttaccttcctaatatcttaactccaaaaataaattaatctccttgcatttataa |
14242737 |
T |
|
| Q |
100 |
acc-tctcatttcacttgagcctcatcacacaaaattaa |
137 |
Q |
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| T |
14242736 |
accttgtcatttctcttgtgtctcataacataaaattaa |
14242698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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