View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5676_low_9 (Length: 486)
Name: NF5676_low_9
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5676_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 9215602 - 9215133
Alignment:
| Q |
1 |
taaagaataaataaatttttacaaataannnnnnnaatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattc |
100 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9215602 |
taaagaataaataaatatttacaaataaattttttaatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattc |
9215503 |
T |
|
| Q |
101 |
ttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataacctgagcaccattcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9215502 |
ttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatccacaaatgtcattccaaatctcacagaataacctgagcaccattcaa |
9215403 |
T |
|
| Q |
201 |
agttgtcgaacaaggaccatatgtaatatccttggacgtttgcaccttgcctgttatacatatttaaaggaaaatggtttagaacatcgttaaattgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9215402 |
agttgtcgaacaaggaccatatgtaatatccttggacgtttgcaccttgcctgtcatacatatttaaaggaaaatggtttagaaaatcgttaaattgatt |
9215303 |
T |
|
| Q |
301 |
ggcgaaaaatagagaaaccttttagagatgtaaaagactacttactcaattgcggatcgaagatagtatagatgacgataatggtaatcaatccgaaaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9215302 |
ggcgaaaaatagagaaaccttttagagatgtaaaagactacttactcaattgcggatcgaagatagtatagatgacgataatggtaatcaatccgaaaag |
9215203 |
T |
|
| Q |
401 |
tgtccatgagcgattcttggactgatagtgtaggatcactgtactcgttaatacctataagtaaagtatg |
470 |
Q |
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| T |
9215202 |
tgtccatgagcgattcttggactgatagtgtaggatcactgtactcgttaatacctataagtaaagtatg |
9215133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 25158783 - 25158975
Alignment:
| Q |
36 |
aatgaataaaactaataacttttctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatctttt |
135 |
Q |
| |
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||||||| || || ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||| |
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| T |
25158783 |
aatgaatgaatctcataacctttctcattagaaacataagcttagtttcttttttgagaaaattcttaaaccacaatgcagacaacttctggtatctttt |
25158882 |
T |
|
| Q |
136 |
caaaccattcttgtaatctacaaaggtcattccaaatctcacagaataacctgagcaccattcaaagttgtcgaacaaggaccatatgtaata |
228 |
Q |
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| T |
25158883 |
caagccattcttataatcaacaaaggtcattccaaatctgacgctataaccggatgaccattcaaaattgtcgaacaatgaccatacgtaata |
25158975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 25254006 - 25253878
Alignment:
| Q |
92 |
agaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataacctgagc |
191 |
Q |
| |
|
|||||||||||||||||||| | || || || | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
25254006 |
agaaaattcttgaaccacaaccctgagagcttttgatatcttttcaaaccatttttgtaatctacaaaggtcattccaaatctcacagtataacctttgt |
25253907 |
T |
|
| Q |
192 |
accattcaaagttgtcgaacaaggaccat |
220 |
Q |
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| T |
25253906 |
gccattcaaaattgtccaacaaggaccat |
25253878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 25179001 - 25179097
Alignment:
| Q |
90 |
tgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataacc |
186 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || | |||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||| |
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| T |
25179001 |
tgagaaaattcttgaaccacaatcctgaaagcttttgatatcttttcaaaccatctttgtaatctataaaagtcattccaaatctcacagtataacc |
25179097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 25167300 - 25167429
Alignment:
| Q |
91 |
gagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataacctgag |
190 |
Q |
| |
|
||||||||||| |||||||||| | || || || | ||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
25167300 |
gagaaaattctggaaccacaatcccgagagcttttgatatcttttcaaaccatttttgtaatctacgaatgtcattccaaatctcacagtataaccttta |
25167399 |
T |
|
| Q |
191 |
caccattcaaagttgtcgaacaaggaccat |
220 |
Q |
| |
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||||||||| ||||| ||||| |||||| |
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| T |
25167400 |
tgccattcaaaattgtccaacaaagaccat |
25167429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 25159086 - 25159163
Alignment:
| Q |
339 |
tacttactcaattgcggatcgaagatagtatagatgacgataatggtaatcaatccgaaaagtgtccatgagcgattc |
416 |
Q |
| |
|
||||||| ||| || ||||||||||| |||||||||| |||||||||||||| |||||||| |||| ||| ||||| |
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| T |
25159086 |
tacttacctaatggcagatcgaagataaaatagatgacggtaatggtaatcaattcgaaaagtatccaagagtgattc |
25159163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 42292664 - 42292540
Alignment:
| Q |
85 |
ttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacagaataa |
184 |
Q |
| |
|
|||||||||||||||| | ||||||| ||| || | || | || ||||||||||||||| |||||||| ||||| |||| ||||||| || | |||| |
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| T |
42292664 |
ttttttgagaaaattcgtaaaccacattgccgacaacttttggtgtcttttcaaaccatttttgtaatccacaaaattcatgccaaatcgcattgcataa |
42292565 |
T |
|
| Q |
185 |
cctgagcaccattcaaagttgtcga |
209 |
Q |
| |
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||||| ||||||||| ||||||| |
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| T |
42292564 |
cctgatgcccattcaaaattgtcga |
42292540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 30363156 - 30363107
Alignment:
| Q |
128 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcac |
177 |
Q |
| |
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||||||||||| |||| ||||||||||||||| |||||||||| ||||| |
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| T |
30363156 |
tatcttttcaagtcattgttgtaatctacaaagttcattccaaacctcac |
30363107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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