View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5678-Insertion-4 (Length: 918)
Name: NF5678-Insertion-4
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 6 - 803
Target Start/End: Complemental strand, 1323585 - 1322784
Alignment:
| Q |
6 |
caataaaaaagaactgacagtcagaagcggaatacccgtatgaacgctagtttataatgaagc----------gcaagtatgttagttatctgactagtc |
95 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1323585 |
caataaaaaagaactgacagtcagacacggaatacccatctgaacgctagtttataatgaagcaaatagatgtgcaagtatgttagttatctgactagtc |
1323486 |
T |
|
| Q |
96 |
aagaaatcattctttttaataagccaaattaatattgaagctctattcatgcacaaggtgtgcaaaaatagataagatatacaacctgttgcaagacaag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1323485 |
aagaaatcattctttttaataagccaaattaatattgaagctctattcatgcacaaggtgtgaaaaaatagataagatatacaacctgttgcaagacaag |
1323386 |
T |
|
| Q |
196 |
gaagagaagaagaaaacatttgcaaaaaccacaagaaagcttgtattctatttagcatgttagaatcatcacaatatgcttcatacatttaagaattttc |
295 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
1323385 |
gcagagaagaagaaaccatttgcaaaaaccacaagaaagcttgtattctatttagcatgttagcatcatcacaatatgcttcaaacatttaagaattttc |
1323286 |
T |
|
| Q |
296 |
actgcatcaaacattaccaaagtttacaaatcctaaaagaacatcaaaccagccagccataactatacaactgtttaaagatatttgaaaaataaacaaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
1323285 |
actgcatcaaacattaccaaagtttacaaatcctaaaagaacatcaaaccagctagccataactatacaactatttaaatatatttgaaaaataaacaaa |
1323186 |
T |
|
| Q |
396 |
taaacgcatacacataatttctgccatcttaatctataataatctgtcaatattatattccaccaccactaataatagaggggaacagaatactatctaa |
495 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
1323185 |
taaacgcatacacacaatttctgccatcttaatctataataatctgtcaatattatattccaccaccgctaataatagaggggaaaagaatactatctaa |
1323086 |
T |
|
| Q |
496 |
gaatcaccaattagatgatgcaacaaacatttttcttgatcaacataatgttaaaccggtatgacatatcattcttggacgtgtcctcgcatcttaagac |
595 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1323085 |
gaatcaccaattagatgatgcaacaaaca---ttcttgatcaacattatgttaaaccggtatgac--atcattcttggacgtgtcctcgcatcttaagac |
1322991 |
T |
|
| Q |
596 |
tataccttccaagctagcaggaaaaatacatttgagccagtggcaacctgttgtaattggctctggtggaggaacaatcataagcacattctcattcctg |
695 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1322990 |
tataccttccaagctagcaggaaaaatacatttgagccagtggcaacctgttgtaattggctctggtggaggaacaatcataagcacgttctcattcctg |
1322891 |
T |
|
| Q |
696 |
tgaacaacccccattacactcactgtgcttccttctttaacatacctgaatttaaaaagaagttacaccaagttatatcatctcttggtcaagataaggt |
795 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1322890 |
tgaacaacccccattacactcaccgtgcttccttctttaacatacctgaatttaaaaagaagttaca-caagttatatcatctcttggtcaagataaggt |
1322792 |
T |
|
| Q |
796 |
tagttaat |
803 |
Q |
| |
|
|||||||| |
|
|
| T |
1322791 |
tagttaat |
1322784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 582 - 733
Target Start/End: Original strand, 300059 - 300210
Alignment:
| Q |
582 |
tcgcatcttaagactataccttccaagctagcaggaaaaatacatttgagccagtggcaacctgttgtaattggctctggtggaggaacaatcataagca |
681 |
Q |
| |
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|||||||| || || |||||||| | ||| || |||||||||||||| ||| ||||| || || || | ||||| || ||||| ||||||||||| | |
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| T |
300059 |
tcgcatctcaaaacaataccttcaaggctggctggaaaaatacatttcgcccattggcatccggtcgtcaaaggctcaggcggaggcacaatcataagta |
300158 |
T |
|
| Q |
682 |
cattctcattcctgtgaacaacccccattacactcactgtgcttccttcttt |
733 |
Q |
| |
|
|||| ||||| || |||||||| ||||||||||| || ||||| |||||||| |
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| T |
300159 |
cattgtcatttctatgaacaactcccattacactaaccgtgctaccttcttt |
300210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 654 - 733
Target Start/End: Complemental strand, 38102349 - 38102270
Alignment:
| Q |
654 |
ggctctggtggaggaacaatcataagcacattctcattcctgtgaacaacccccattacactcactgtgcttccttcttt |
733 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |||||||| || || ||||| |||||||| |
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| T |
38102349 |
ggctcaggtggaggcacaatcataagtacattgtcatttctatgaacaactcccattacgctaaccgtgctaccttcttt |
38102270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 843 - 911
Target Start/End: Complemental strand, 11842421 - 11842354
Alignment:
| Q |
843 |
cttcaatcatacttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaagt |
911 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
11842421 |
cttcaatcagacttaattcattta-aaaaatattttatagtgtctgtaatttgaaaaagaaaagtaagt |
11842354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 858 - 910
Target Start/End: Complemental strand, 25295176 - 25295124
Alignment:
| Q |
858 |
attcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaag |
910 |
Q |
| |
|
||||||||||||| ||||||| ||||||| | ||||| ||||||||||||||| |
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| T |
25295176 |
attcatttttaaagatattttatagtgtcctgaattttaaaaagaaaagtaag |
25295124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 843 - 910
Target Start/End: Complemental strand, 16509394 - 16509327
Alignment:
| Q |
843 |
cttcaatcatacttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaag |
910 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||||||| |
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|
| T |
16509394 |
cttcaatcacacttgatttatttttaaaaacattttatagtgtctttaattcaaaaaagaaaagtaag |
16509327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 910
Target Start/End: Original strand, 29431857 - 29431914
Alignment:
| Q |
853 |
acttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaag |
910 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||| ||||||||||||| ||||||| |
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|
| T |
29431857 |
acttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaag |
29431914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 853 - 911
Target Start/End: Original strand, 22591548 - 22591606
Alignment:
| Q |
853 |
acttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaagt |
911 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||| | |||||||| ||||||||||||| |
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|
| T |
22591548 |
acttcattcttttttaaaaatattttatagtgtccttaatttaaacaagaaaagtaagt |
22591606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 843 - 911
Target Start/End: Original strand, 38198179 - 38198247
Alignment:
| Q |
843 |
cttcaatcatacttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaagt |
911 |
Q |
| |
|
||||||||| |||| ||||||||| ||||| | ||| |||||||| |||||||||| ||||||||||| |
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|
| T |
38198179 |
cttcaatcacacttaattcattttaaaaaacactttatagtgtctgtaatttaaaaatgaaaagtaagt |
38198247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 844 - 909
Target Start/End: Original strand, 36166221 - 36166286
Alignment:
| Q |
844 |
ttcaatcatacttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaa |
909 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || |||| |||||| |||| |||||||| |
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|
| T |
36166221 |
ttcaatcacacttgattgatttttaaaaatattttataatgtccgtaatttataaaataaaagtaa |
36166286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 847 - 910
Target Start/End: Complemental strand, 25454861 - 25454802
Alignment:
| Q |
847 |
aatcatacttgattcatttttaaaaatattttttagtgtcttcaatttaaaaaagaaaagtaag |
910 |
Q |
| |
|
||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
25454861 |
aatcagacttaattcatttttaaaaacattt----gtgtcttcaatttaaaaaagaaaagtaag |
25454802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 847 - 906
Target Start/End: Complemental strand, 15915841 - 15915780
Alignment:
| Q |
847 |
aatcatacttgattcatttttaaaaatattttttag--tgtcttcaatttaaaaaagaaaag |
906 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
15915841 |
aatcatacttaattcattttaaaaaatatattttatattgtctttaatttaaaaaagaaaag |
15915780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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