View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5678-Insertion-6 (Length: 442)
Name: NF5678-Insertion-6
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 207 - 442
Target Start/End: Complemental strand, 28092524 - 28092289
Alignment:
| Q |
207 |
caacagctaagaatcagttaattcttacgttgttacttagcaacctttattgacctcagaataaatattatttcccaaaccatcaataactttctttcaa |
306 |
Q |
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| T |
28092524 |
caacagctaagaatcagttaattcttccgttgttacttagcaacctttattgacctcagaataaatattatttcccaaaccatcaataactttctttcaa |
28092425 |
T |
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| Q |
307 |
tatggcatccacttaagttgtaaccagatggaatcgtgttagattcgtatactctaaataagggagttgtgatttatccacaaaaagtaaggtataacca |
406 |
Q |
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| T |
28092424 |
tatggcatccacttaagttgtaaccagatggaatcatgttagattcgtatactctaaataagggagttgtgatttatccacaaaaagtaaggtataacca |
28092325 |
T |
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| Q |
407 |
gagacgtcgtcgtggagaacataaatagacaaggat |
442 |
Q |
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| T |
28092324 |
gagatgtcgtcgtggagaacataaatagagaaggat |
28092289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 28092696 - 28092521
Alignment:
| Q |
9 |
cttaatagaaaataagaatgccattatatactattggctatgttcatatatcaaacttggaacctaaaaagcactcgcttaacaacaataaaatcgttcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28092696 |
cttaatagaaaataagaatgccattatatactattggctatgttcatatatcaaacttggaacctaaaaagcactcgcttaacaacaataaaatcgttcc |
28092597 |
T |
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| Q |
109 |
accccattagacatcacacgcaacaaatactcattagcaataaaaactaacttatcatttttcttccatgagcaac |
184 |
Q |
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| T |
28092596 |
accccattagacatcacacgcaacaaatactcattagcaataaaaactaacttatcatttgtcttccatgagcaac |
28092521 |
T |
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