View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5678_low_1 (Length: 1034)
Name: NF5678_low_1
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 831; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 831; E-Value: 0
Query Start/End: Original strand, 16 - 1017
Target Start/End: Original strand, 2483447 - 2484419
Alignment:
| Q |
16 |
caattaccgtaccaataaggagtggttcatatcaagaaaatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483447 |
caattaccgtaccaataaggagtggttcatatcaagaaaatgatgaaataagtctttaaaataatggtttaaggacaaacttttttgcaataaataactc |
2483546 |
T |
|
| Q |
116 |
ctcaaaactgtcttctcttcacttttatttagataataaagtcttggacttaactattgatattctatgaaatcctaacataggttgttcttattctatt |
215 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
2483547 |
ctcaaatctgtcttctcttcacttttatttagataataaagtcttggacttaactattgatattctatgaaaccct----------gttcttattctatt |
2483636 |
T |
|
| Q |
216 |
tttctttattttatatctgtacgtatttgtattgttaacatggtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattcc |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483637 |
tttctttattttatatctgta----tttgtattgttaacatggtatcaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattcc |
2483732 |
T |
|
| Q |
316 |
aaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggttttcttagtttgttaa |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483733 |
aaaagtttgggattgtttttggtttgtcttttgaatattcgttatattgatagtgatttggttttcttaatttgttattttggttttcttagtttgttaa |
2483832 |
T |
|
| Q |
416 |
aaatattcagaggcattacaaattgattattgagtttcttcatgtgcagcaagtggcatatcttgtgtttgcaattttggtttcttcttaaaataggcac |
515 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
2483833 |
aaatcttcagaggcattacaacttgattattgagtttcttcatgtgcagcaagtggcatatcttgaatt-gcaattttggtttcttcttaaaataggcac |
2483931 |
T |
|
| Q |
516 |
cgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagtta |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483932 |
cgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagtta |
2484031 |
T |
|
| Q |
616 |
ttggattaattgagaggcggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggtgataaattg |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
2484032 |
ttggattaattgagaggcggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgatgcaatttggtgataaattg |
2484131 |
T |
|
| Q |
716 |
tatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattct |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484132 |
tatatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattct |
2484231 |
T |
|
| Q |
816 |
ggttgtactttgaattcggtttggttcatttggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgc |
915 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484232 |
ggttgtactttgaattc--------------ggtttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgc |
2484317 |
T |
|
| Q |
916 |
atatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttctttgtttaactagtttctccttcattagttttt |
1015 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||| |
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|
| T |
2484318 |
acatctcccctttatgattgcacttcacttccctctatttgattcgttctctcttttgatttgtttgtttgtttaattggtttctccctcattagttttt |
2484417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 238 - 400
Target Start/End: Original strand, 2479191 - 2479359
Alignment:
| Q |
238 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttta |
335 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
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|
| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgttttt |
2479290 |
T |
|
| Q |
336 |
ggtttgtcttttgaatattcgt----tatattgatagtgatttggttttcttaatttgttattttggtt |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||| |||||| |
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| T |
2479291 |
ggtttgtcttttgaatattcgttatatatattgatagtgatttagttctcttgatttgttatgttggtt |
2479359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2478943 - 2479005
Alignment:
| Q |
16 |
caattaccgtaccaataaggagtggttcatatcaagaaaatg-atgaaataagtctttaaaat |
77 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
2478943 |
caattaccgtaccaataaggtctggttcagatcaagaaaatgtatgaaataagtctataaaat |
2479005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
258 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
327 |
Q |
| |
|
|||| ||||| |||||| |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |
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| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 508 - 718
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
508 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
607 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
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| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
|
| Q |
608 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
706 |
Q |
| |
|
||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
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|
| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
707 |
gataaattgtat |
718 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17927424 |
gataaattgtat |
17927413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 273 - 396
Target Start/End: Complemental strand, 3775795 - 3775671
Alignment:
| Q |
273 |
ttcgatccgc-ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtga |
371 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||||| || | |||| |||||||| ||| ||||||| || ||| |
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|
| T |
3775795 |
ttcgatccgccttgaaccacttgtcgcttctgttatcgatttcaaaaagtttgggattgtgtttgatttgccttttgaagattgattatattaatcatga |
3775696 |
T |
|
| Q |
372 |
tttggttttcttaatttgttatttt |
396 |
Q |
| |
|
||||||| || || |||||||||| |
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|
| T |
3775695 |
tttggttctcccaacttgttatttt |
3775671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
239 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
284 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||| ||||||||| |
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|
| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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