View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5678_low_2 (Length: 482)
Name: NF5678_low_2
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 54036672 - 54036879
Alignment:
| Q |
15 |
aattacaacaacttcattgatattttggttcaagtgtctaggtttgatcgaactctattgtttggaaatagctctttagaaagcaacatttggcttctaa |
114 |
Q |
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| T |
54036672 |
aattacaacaacttcattgatattttggttcaagtgtctaggtttgatcgaactctattgtttggaaatagctctttagaaagcaacatttggcttctaa |
54036771 |
T |
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| Q |
115 |
tcgtcttgtatgttgctcaggctgaggttgtattgtttgattgatatttataactttgaggtaagtagtgttggtccctcctatttcattttaactgatt |
214 |
Q |
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| T |
54036772 |
tcgtcttgtatgttgctcaggctgagcttgtattgtttgattgatatttataactttgaggcaagtagtgttggtccctcctgtttcattttaactgatt |
54036871 |
T |
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| Q |
215 |
ggactcta |
222 |
Q |
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|||||||| |
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| T |
54036872 |
ggactcta |
54036879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 265 - 438
Target Start/End: Original strand, 54036920 - 54037093
Alignment:
| Q |
265 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
364 |
Q |
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| T |
54036920 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctctgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
54037019 |
T |
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| Q |
365 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagttattcttcttcttctcactcttttattatatt |
438 |
Q |
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| T |
54037020 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagttaatcttcttcttctcgctcttttattatatt |
54037093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 1080384 - 1080272
Alignment:
| Q |
288 |
aaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtttgagcaaaataacaaaaaccatg |
387 |
Q |
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| T |
1080384 |
aaaaatgttaattgactgctctctctctgt---tactgttatgatggccacattactgccttgagtggacatgcgattgagcaaaataacaagaaccaag |
1080288 |
T |
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| Q |
388 |
aagaagaacaacaaaa |
403 |
Q |
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| T |
1080287 |
aagaagaacaacaaaa |
1080272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 441
Target Start/End: Complemental strand, 1080237 - 1080206
Alignment:
| Q |
410 |
tcttcttcttctcactcttttattatattatt |
441 |
Q |
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| T |
1080237 |
tcttcttcttctcactcttttattatattatt |
1080206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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