View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5678_low_3 (Length: 429)

Name: NF5678_low_3
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5678_low_3
NF5678_low_3
[»] chr1 (2 HSPs)
chr1 (17-359)||(11405008-11405353)
chr1 (251-329)||(2733503-2733581)
[»] scaffold0330 (1 HSPs)
scaffold0330 (223-358)||(14145-14277)
[»] chr7 (3 HSPs)
chr7 (232-358)||(22952756-22952881)
chr7 (223-352)||(30057927-30058055)
chr7 (209-266)||(23313255-23313312)
[»] scaffold1657 (1 HSPs)
scaffold1657 (223-355)||(240-372)
[»] chr8 (3 HSPs)
chr8 (219-271)||(3604672-3604724)
chr8 (219-268)||(587621-587670)
chr8 (219-268)||(626252-626301)
[»] chr6 (6 HSPs)
chr6 (209-268)||(20189181-20189240)
chr6 (209-268)||(22146751-22146810)
chr6 (219-262)||(28961026-28961069)
chr6 (219-268)||(9313547-9313596)
chr6 (227-268)||(16883867-16883908)
chr6 (223-268)||(28118141-28118186)
[»] chr5 (1 HSPs)
chr5 (223-268)||(18239282-18239327)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 11405008 - 11405353
Alignment:
Q  17 aatttttccatcgtttaagaaaaattgatcagataaaattacaaaagaataacatgcaaataatt---ag-tgccatcc-atttttggttttcagctctg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |  ||||| |||||||||||||||||||     
T  11405008 aatttttccatcgtttaagaaaaattgatcagataaaattacaaaagaataacatgcaaataatattaagatttcatcccatttttggttttcagctcta 11405107  T
Q  112 tacaagnnnnnnnnngtttagatttcatccatctaatacaagtaatattaagattatttgattttagactctcaagacagctctctgtacatgtatgtga 211  Q
    |||||              ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  11405108 tacaaaaaaaaaaaaaa--agatttcatccctctaatacaagtaatattaagattatttgattttagactctcaaaacagctatctttacatgtatgtga 11405205  T
Q  212 ttgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattat 311  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11405206 ttgactattgacaaatatattaaaaatgtatcgaaatattaaaattaataacttcgtctctgtagggattattttaatcttaacttgacaaattaattat 11405305  T
Q  312 aataagaatttaacaaatatggggtatttagtgcatatatttgagttc 359  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11405306 aataaaaatttaacaaatatggggtatttagtgcatatatttgagttc 11405353  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 2733503 - 2733581
Alignment:
Q  251 taaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaatttaacaaat 329  Q
    |||||||||||||||||||||    | |||||||| ||||| ||||||| || |||||||||||||| |||||||||||    
T  2733503 taaaatttataagttcgtctccacagtgattatttcaatctcaacttgaaaatttaattataataaggatttaacaaat 2733581  T

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Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 358
Target Start/End: Complemental strand, 14277 - 14145
Alignment:
Q  223 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 322  Q
    |||||||| ||||||||||||||| || ||| ||||||||||| ||||| |   ||||| ||||||||| ||| |   || |||||||||||||| ||||    
T  14277 caagtatactaaaaatgtatcgaagtaataagatttataagtttgtctccgcatggattgttttaatctcaacgtagaaatttaattataataag-attt 14179  T
Q  323 aacaaatatggggtatttagtgcatatatttgagtt 358  Q
    |||||  ||||||||| ||| |||||||||| ||||    
T  14178 aacaa--atggggtatgtagagcatatatttcagtt 14145  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 22952881 - 22952756
Alignment:
Q  232 taaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaatttaacaaatat 331  Q
    |||||||| |||||| || ||||||||||||||| | |||     ||||| ||| ||||| |||||||||| |||||||||||||| ||||||||||| |    
T  22952881 taaaaatgcatcgaagtaataaaatttataagtttgcctccacatggattgtttcaatctaaacttgacaatttaattataataaggatttaacaaat-t 22952783  T
Q  332 ggggtatttagtgcatatatttgagtt 358  Q
     ||||||  |  |||||||||||||||    
T  22952782 agggtatgcaaagcatatatttgagtt 22952756  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 352
Target Start/End: Original strand, 30057927 - 30058055
Alignment:
Q  223 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 322  Q
    ||||| ||||||||||| |||||| || |||| |||||||| |||| ||  |  ||||| ||| ||||| |||| ||||| ||||||||||| || ||||    
T  30057927 caagtgtattaaaaatgcatcgaagtagtaaa-tttataagatcgtttccatgaggattgtttcaatctcaactcgacaatttaattataattaggattt 30058025  T
Q  323 aacaaatatggggtatttagtgcatatatt 352  Q
    ||||||||  |||||| ||| |||||||||    
T  30058026 aacaaataacgggtatgtagagcatatatt 30058055  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 23313255 - 23313312
Alignment:
Q  209 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttc 266  Q
    |||| |||| ||| ||||| || ||||||| |||||||||| ||||||||||||||||    
T  23313255 tgatagacttttagcaagtgtactaaaaatatatcgaaataataaaatttataagttc 23313312  T

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Target: scaffold1657 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 355
Target Start/End: Original strand, 240 - 372
Alignment:
Q  223 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 322  Q
    ||||| ||||||||||| |||||| || |||||||||||||||||||||      |||| ||| ||||| |||| |  || |||||||||||||| ||||    
T  240 caagtgtattaaaaatgcatcgaagtaataaaatttataagttcgtctccacaaagattgtttcaatctcaactcggtaatttaattataataaggattt 339  T
Q  323 aacaaatatggggtatttagtgcatatatttga 355  Q
    || |||||  |||||| ||| | ||||||||||    
T  340 aaaaaatagcgggtatgtagaggatatatttga 372  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 3604672 - 3604724
Alignment:
Q  219 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctc 271  Q
    ||||||||| || |||||||| ||||||||| |||||||||||||||| ||||    
T  3604672 ttaacaagtttactaaaaatgcatcgaaataataaaatttataagttcatctc 3604724  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 587670 - 587621
Alignment:
Q  219 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||    
T  587670 ttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgt 587621  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 626252 - 626301
Alignment:
Q  219 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||    
T  626252 ttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgt 626301  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 20189181 - 20189240
Alignment:
Q  209 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    |||| |||| ||| ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  20189181 tgatagacttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 20189240  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 22146810 - 22146751
Alignment:
Q  209 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    |||| |||| ||| ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  22146810 tgatagacttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 22146751  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 28961069 - 28961026
Alignment:
Q  219 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataa 262  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  28961069 ttaacaagtatactaaaattgtatcgaaataataaaatttataa 28961026  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9313547 - 9313596
Alignment:
Q  219 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    ||||||||| || ||||||| ||||||| || ||||||||||||||||||    
T  9313547 ttaacaagtgtactaaaaatatatcgaagtaataaaatttataagttcgt 9313596  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 16883908 - 16883867
Alignment:
Q  227 tatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  16883908 tatattaaaaatatatcgaagtaataaaatttataagttcgt 16883867  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 28118186 - 28118141
Alignment:
Q  223 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  28118186 caagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 28118141  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 18239282 - 18239327
Alignment:
Q  223 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 268  Q
    ||||| ||||||||||| |||||| || ||||||||||||||||||    
T  18239282 caagtgtattaaaaatgaatcgaagtaataaaatttataagttcgt 18239327  T

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