View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5678_low_4 (Length: 376)
Name: NF5678_low_4
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 45060669 - 45060353
Alignment:
| Q |
10 |
ggaggagcagagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgctactctttgagacagcactcttaacttctggattt |
109 |
Q |
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| T |
45060669 |
ggaggagctgagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgcttctctttgagacagcactcttaacttctggattt |
45060570 |
T |
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| Q |
110 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactggtggagatgaagacatgc |
209 |
Q |
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| T |
45060569 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactggtggagatgaagacatgc |
45060470 |
T |
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| Q |
210 |
ctccactggaggaggaagtaggcgctgaagagagcaagatggaggaggttgattaaggagtcaccactcaccaatggtctttatgtttgtgtcagttgtt |
309 |
Q |
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| T |
45060469 |
ctccaatggaggaggaagtaggcgctgaagagagcaagatggaggaggttgattaaggagtcaccactcaccaatggtctttatgtttgtgtcagttgtt |
45060370 |
T |
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| Q |
310 |
tattgtaggaaaaaact |
326 |
Q |
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| T |
45060369 |
tattgcaggaaaaaact |
45060353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 45060274 - 45060238
Alignment:
| Q |
324 |
actgtctttggcatgttatcaagtggtatcaaatgtg |
360 |
Q |
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| T |
45060274 |
actgtctttggcatgttatcaagtggtatcaaatgtg |
45060238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 18622199 - 18622381
Alignment:
| Q |
10 |
ggaggagcagagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgctactctttgagacagcactcttaacttctggattt |
109 |
Q |
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| T |
18622199 |
ggaggaactgaggaagaggtccgaagctgataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccgctcttttgacttctggtttt |
18622298 |
T |
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| Q |
110 |
agcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagactgg |
192 |
Q |
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| T |
18622299 |
agccttgatgagccaaacacctttgctggaaggattcataggatgttgaaattgggtcttagcatagatgaggacgaaactgg |
18622381 |
T |
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