View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5678_low_8 (Length: 255)
Name: NF5678_low_8
Description: NF5678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5678_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 28924950 - 28924716
Alignment:
| Q |
17 |
aatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaatgaaactaattttctaaaccatttttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28924950 |
aatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaatgaaactaattttctaaaccatttttct |
28924851 |
T |
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| Q |
117 |
attagatgttgaatatactatattatttcctgagtaagagcatagctgggtttctgacgcggaggtcattatttgttattgatttcaaaatttgttgatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28924850 |
attagatgttgaatatactatattatttcctgagtaagagcatagctgggtttctgacgtggaggtcattatttgttattgatttcaaaatttgttgatg |
28924751 |
T |
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| Q |
217 |
ttatccgatatgatttgtgtatccatattcttcaa |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28924750 |
ttatccgatatgatttgtgtatccatattcttcaa |
28924716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 28901322 - 28901088
Alignment:
| Q |
17 |
aatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaatgaaactaattttctaaaccatttttct |
116 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28901322 |
aatattttctgctgcactatcccccaattctgaaacctggttgcaatcaaagtagtattttccaagttaaaatgaaactcattttctaaaccatttttct |
28901223 |
T |
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| Q |
117 |
attagatgttgaatatactatattatttcctgagtaagagcatagctgggtttctgacgcggaggtcattatttgttattgatttcaaaatttgttgatg |
216 |
Q |
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|||||||||||| |||||| |||||||||||| || ||||||||||||||||||||| | | | || ||||| ||||| || ||||||| |||||||||| |
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| T |
28901222 |
attagatgttgactatactgtattatttcctgcgttagagcatagctgggtttctgatgtgaatgtgattatctgttactggtttcaaagtttgttgatg |
28901123 |
T |
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| Q |
217 |
ttatccgatatgatttgtgtatccatattcttcaa |
251 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
28901122 |
ttattcgatatgatttgtgtatccatattcttcaa |
28901088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 28915753 - 28915518
Alignment:
| Q |
17 |
aatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaatg-aaactaattttctaaaccatttttc |
115 |
Q |
| |
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||||||||||| |||||| |||| |||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| |||| | |||||||||||| |
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| T |
28915753 |
aatattttctgctgcaatgtcccacaattctgaaacctggtttcaatcaaagtagtggtttccaagttaaaatggaaactcatttccaaaaccatttttc |
28915654 |
T |
|
| Q |
116 |
tattagatgttgaatatactatattatttcctgagtaagagcatagctgggtttctgacgcggaggtcattatttgttattgatttcaaaatttgttgat |
215 |
Q |
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||| | |||| |||||| | |||||||||| | |||||| ||||||||||||||||| | | |||| |||||||||||||||||||| | ||||||||| |
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| T |
28915653 |
tataatttgtttaatatattgtattatttccggcgtaagaccatagctgggtttctgatgtgaaggtgattatttgttattgatttcatagtttgttgat |
28915554 |
T |
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| Q |
216 |
gttatccgatatgatttgtgtatccatattcttcaa |
251 |
Q |
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| T |
28915553 |
gttatccgatatgatttttgtatccataatcttcaa |
28915518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 28890751 - 28890596
Alignment:
| Q |
90 |
gaaactaattttctaaaccatttttctattagatgttgaatatactatattatttcctgagtaagagcatagctgggtttctgacgcggaggtcattatt |
189 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||||| | |||| ||||| |
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| T |
28890751 |
gaaactcattttctaaaccatttttctataagatgttgaatatactgtattatttcttgagtaagagcatagccgggtttctgctatgaaggtggttatt |
28890652 |
T |
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| Q |
190 |
tgttattgatttcaaaatttgttgatgttatccgatatgatttgtgtatccatatt |
245 |
Q |
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| T |
28890651 |
tgttattgacttcaaagtttgttgatgttatccgatataatttgtgtatctatatt |
28890596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 28933883 - 28933657
Alignment:
| Q |
19 |
tattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaatg-aaactaattttctaaaccatttttcta |
117 |
Q |
| |
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||||||||| ||||||| | ||| || |||| |||||||||||||| |||||| |||||||| ||| || ||||| |||||||||||||| |||||| |
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| T |
28933883 |
tattttctgccgcaatattctccatttatgaaacctggttgcaatcatagtagt---ttccaagtaaaagtggaaacttattttctaaaccatatttcta |
28933787 |
T |
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| Q |
118 |
ttagatgttgaatatactatattatttcctg-agtaagagcatagctgggtttctgacgcggaggtcattatttgttattgatttcaaaatttgttgatg |
216 |
Q |
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| |||||||| ||||||| | |||||| | ||||||||||||||||||||||| | | |||| ||||||| ||||||||||||| |||||||||| |
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| T |
28933786 |
taagatgttggatatactct-----ttcctgcattaagagcatagctgggtttctgatgtgaaggtggttatttgatattgatttcaaagtttgttgatg |
28933692 |
T |
|
| Q |
217 |
ttatccgatatgatttgtgtatccatattcttcaa |
251 |
Q |
| |
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||||||| ||| ||||| |||||||||||| |||| |
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| T |
28933691 |
ttatccggtattatttgggtatccatattcgtcaa |
28933657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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