View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5679-Insertion-2 (Length: 675)
Name: NF5679-Insertion-2
Description: NF5679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5679-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Complemental strand, 8348141 - 8347517
Alignment:
| Q |
8 |
aaatgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacacaatc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8348141 |
aaatgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaccaaaacacaatc |
8348042 |
T |
|
| Q |
108 |
aaactttattacaagaaagttttaacaaaatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactgc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8348041 |
aaactttattacaagaaagttttaacaaaatgtaattcattttatttcgtacacacccagaataggcattcatcctacccataaccaaacggcacactga |
8347942 |
T |
|
| Q |
208 |
taaccaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctgcaaaaacaagaattacttttagttcttgga |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8347941 |
taaccaaactacattattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctgcaaaaacaaaaattacttttagttcttgga |
8347842 |
T |
|
| Q |
308 |
aacaacatcaaagcattgcaatttccagggaataaatt-------------gtaaataaatggtcatgacataagataaatcaagcacctaatcattaat |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8347841 |
aacaacatcaaagcattgccatttccagggaataaattgcatatgggggcagcaaataaatggtcatgatataagataaatcaagcacctaatcattaat |
8347742 |
T |
|
| Q |
395 |
caggacaagtgaaatacatagattaacttaactatgcaaacaaaggtgatgttatgagattgatatggtgtattatagctgatatatccaaaatcaatga |
494 |
Q |
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| T |
8347741 |
caggacaagtgaaatacatagattaacttaactgtgcaaacaaaggtgatgttatgagattgatatggtgtattatagctgatatatccaaaatcgatga |
8347642 |
T |
|
| Q |
495 |
gcaaagaaatacaaatagtagaaatgcattagctatacatatatgatgtatatcaacagtggtagtagcaaagcatatatatgcaagatcataaatattt |
594 |
Q |
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| T |
8347641 |
gcaaagcaatacaaatagtagaaatgcattagctatacatatatgatgtatatcaacagtggtagtagcaaaacatgtatatgcaagatcaaaaatattt |
8347542 |
T |
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| Q |
595 |
gtgactcagttaaaccgtaaaagaa |
619 |
Q |
| |
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| T |
8347541 |
gtgactcagttaaaccgtaaaagaa |
8347517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 26730418 - 26730273
Alignment:
| Q |
200 |
cacactgctaaccaaactacattattcaaaaacagcaaaaga-tgtactcatcttgtacagtaccaataggagatcctgcaaaaacaagaa-ttactttt |
297 |
Q |
| |
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|||| |||||| ||| ||||||||||| | |||||||||| | || | ||||| ||||| || |||| |||||||||||||| || || ||| ||| |
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| T |
26730418 |
cacagtgctaatcaatctacattattctacaacagcaaaaaaatgcaatcatcccatacagaacgaataagagatcctgcaaaagtaaaaaattaaattt |
26730319 |
T |
|
| Q |
298 |
agttcttggaaacaacatcaaagcattgcaatttccagggaataaa |
343 |
Q |
| |
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||| |||||||| |||||||||||| ||||||||||| |||||||| |
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| T |
26730318 |
agtacttggaaataacatcaaagcagtgcaatttccatggaataaa |
26730273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 41 - 346
Target Start/End: Complemental strand, 35901476 - 35901177
Alignment:
| Q |
41 |
atagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacacaatcaaactttattacaagaaagttttaacaaaatgt |
140 |
Q |
| |
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|||||||||||| |||||||||| | ||| | |||||||||||||||||||||| |||||||||| ||||||||| | | |||||||| ||||||||| |
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| T |
35901476 |
atagcatataaacgattacatttccctacagatactaccaaacatgaaagcttaagaaaacacaattaaactttatcaaaggaaagtttcaacaaaatga |
35901377 |
T |
|
| Q |
141 |
aattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactgctaaccaaactacattattcaaaaacagcaaaag |
240 |
Q |
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||||||||||||| |||||| | |||||||||||||||||||||| || |||||| |||||| | | | |||||||||||| ||||||||||||| |
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| T |
35901376 |
cattcattttatttggtacacaacaagaataggcattcatcctacccttatccaaacagcacac----atcgacactacattattctaaaacagcaaaag |
35901281 |
T |
|
| Q |
241 |
atgtactcatcttgtacagtaccaataggagatcctgcaaaaacaagaattacttttagttcttggaaacaacatcaaagcattgcaatttccagggaat |
340 |
Q |
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|||||||| || || | ||||||||||||||||||| |||| || ||||| ||||||||||||||||||| |||||||||||||| |||||| || || |
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| T |
35901280 |
atgtactcgtcccgttcggtaccaataggagatcctgtaaaa--aaaaattaattttagttcttggaaacaatatcaaagcattgcagtttccatggcat |
35901183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 44146770 - 44146720
Alignment:
| Q |
272 |
atcctgcaaaaacaagaattacttttagttcttggaaacaacatcaaagca |
322 |
Q |
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| T |
44146770 |
atcctgcaaaaataagtattagttttagtgcttagaaacaacatcaaagca |
44146720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 35901163 - 35901083
Alignment:
| Q |
348 |
aaataaatggtcatgacataagataaatcaagcacctaatcattaatcaggacaagtgaaatacatagattaacttaactatgcaa |
433 |
Q |
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|||||||||||||||| | ||||||||||||| || ||||||||| | ||||| ||||| ||||||||||| |||| ||||| |
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| T |
35901163 |
aaataaatggtcatgataaaagataaatcaagtac-----cattaatcaaggcaagtcaaatatatagattaactaaactgtgcaa |
35901083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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